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When downloading `https://zenodo.org/record/1435834/files/dwpcs_length-2_damping-0.0.zip` from https://zenodo.org/record/1435834, I got:
```python-traceback
python manage.py populate_database --ma…
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Following #78 & https://github.com/greenelab/connectivity-search-backend/pull/80, I noticed the following unstaged change in the git repo on search-api.het.io:
```patch
diff --git a/dj_hetmech/set…
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Hi, I followed the steps in the readme and try to connect the front end with the back end. However, though I could open page http://localhost:8000/v1/ I got error when trying to open http://localhost:…
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In https://github.com/greenelab/hetmech/pull/173, I began touching up some of the rephetio epilepsy predictions for the manuscript. Specifically, I'm most interested in including visualizations from:
…
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User feedback in https://github.com/greenelab/connectivity-search-backend/issues/74 highlighted some issues with the accessibility of our database. I updated the README in https://github.com/greenelab…
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I renamed the default branch to `main` and updated source in https://github.com/greenelab/connectivity-search-backend/commit/3c4e558afc3f7cb01b816254e86dcf98b073f85e.
Looking at the [CI Logs](https…
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We had a hetmech conference call today with @bdsullivan @cgreene @zietzm @kkloste and Drew van der Poel. @bdsullivan brought up the possibilities of using other methods than XSwap to create permuted h…
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We've now completed computing DWPCs and their corresponding DGP null distributions for all metapaths up to length 3 in Hetionet v1.0. We're working on building a database with this information in http…
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Refs #74
We would like to cache the DWPC matrices on disk, with the ability to rapidly read them. I looked into several different storage methods. HDF5 has a nice Python (somewhat) wrapper called …
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I'd like performance to be a little snappier. Especially when selected genes and experiments. The checkmark should show up right away, while more intense calculations (like enriched signatures) are do…