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Currently we have a few mentions of related works in the [introduction other works section](https://greenelab.github.io/connectivity-search-manuscript/v/a8e6b35298c4011dc06ae73fe6268ff97c89d3d0/#todo-…
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I'm reviewing the following OpenBioLinks manuscript for the journal _Bioinformatics_:
> **OpenBioLink: A resource and benchmarking framework for large-scale biomedical link prediction**
Anna Bre…
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Thanks for the work setting up Hetionet!
Is it possible to add the cancer drug Ceritinib (https://www.drugbank.ca/drugs/DB09063)?
A similar compound Crizotinib (https://www.drugbank.ca/drugs/DB0…
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It's logo time again. This is all I could come up with that was reasonably good. Cast your votes or make your suggestions:
https://jsfiddle.net/evbg4aht/show
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In https://github.com/greenelab/hetmech/pull/140 / https://github.com/greenelab/hetmech/pull/140/commits/b882476bc4f1807033843e22392dacfdeaaec598, we specified computing degree-grouped permutation sta…
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I queried metadata for my PhD thesis using it's ISBN:
```
curl --silent \
--data 9781339919881 \
--header 'Content-Type: text/plain' \
http://127.0.0.1:1969/search | jq
```
This return…
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Check out the `xarray` package (https://github.com/pydata/xarray) to store hetnets as a multidimensional array.
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We are considering creating another base representation of hetnets. One of the main goals is to facilitate faster network loading, which at present can take over a minute and a half to load a graph.
…
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Currently Pubtator uses MeSH ids for disease and compound mentions, but for our interests we will need to convert these ids into the same ids hetnets are using. @dhimmel let me know if you want to gra…
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In, the past, we've permuted hetnets via the hetio package. We have also [explored](https://thinklab.com/d/136) a Cypher implementation. The method we use is called XSwap as described in:
> [**Rand…