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greenelab
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pubtator
Retrieve and process PubTator annotations
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Unspecified numpy version breaks execute.py
#33
Mnikley
closed
1 year ago
1
Bump requests from 2.22.0 to 2.31.0
#32
dependabot[bot]
opened
1 year ago
0
Error while starting pubtator locally
#31
gdilieto-unimib
opened
2 years ago
1
Bump lxml from 4.5.2 to 4.9.1
#30
dependabot[bot]
opened
2 years ago
0
Bump lxml from 4.5.2 to 4.6.5
#29
dependabot[bot]
closed
2 years ago
1
Bump lxml from 4.5.2 to 4.6.3
#28
dependabot[bot]
closed
2 years ago
1
bioconcepts2pubtatorcentral.offset.gz not available any more
#27
alisadeghian
opened
3 years ago
3
Bump lxml from 4.5.2 to 4.6.2
#26
dependabot[bot]
closed
3 years ago
1
Remove duplicate code
#25
danich1
closed
3 years ago
0
Implement download tracker and pipeline execution change
#24
danich1
closed
4 years ago
2
Tutorial for its usage
#23
kcmtest
opened
4 years ago
29
Modify execute.sh to only download missing/incomplete files?
#22
khughitt
opened
4 years ago
11
Bug fixes
#21
danich1
closed
4 years ago
1
This patch converts Pubtator to Pubtator Central
#20
danich1
closed
4 years ago
0
Pubtator central patch
#19
danich1
closed
4 years ago
0
error processing bioconcepts2pubtator_offsets.gz
#18
ghost
opened
4 years ago
7
Add lfs tracking and bug fix
#17
danich1
closed
7 years ago
1
Making quick fix
#16
danich1
closed
7 years ago
0
Hetnet ids
#15
danich1
closed
7 years ago
0
Compound conversion to DrugBank / Hetionet IDs
#14
dhimmel
closed
7 years ago
0
Convert to Hetionet v1.0 identifiers
#13
danich1
closed
7 years ago
1
Hetnet IDs for Disease/Compound IDs
#12
danich1
closed
7 years ago
4
Added itertools functionality for splitting text into articles.
#11
zietzm
closed
7 years ago
0
Upgrade infrastructure: Python 3.6, Travis CI, compression, and tag ordering
#10
dhimmel
closed
7 years ago
2
Shelving
#9
danich1
closed
7 years ago
4
Added the "tricky" document to the example .txt file.
#8
zietzm
closed
7 years ago
1
Consider itertools.groupby for a slick refactoring
#7
dhimmel
closed
7 years ago
1
Restructure directories: move code out of data
#6
danich1
closed
7 years ago
2
Move .py files out of data
#5
dhimmel
closed
7 years ago
1
Process and upload the complete pubtator catalog
#4
dhimmel
closed
4 years ago
5
Modify PubTator example file to have more diverse/tricky documents
#3
dhimmel
closed
7 years ago
1
Merging Pubtator Conversion Files
#2
danich1
closed
7 years ago
1
Migrate greenelab/snorkeling#11 to this repo
#1
dhimmel
closed
7 years ago
2