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Current UI (and API) does not offer a direct way to copy a collection. Programatically, what I have to do for copying a collection is to query the server using the folder endpoint:
http://candygram…
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When using the girder_worker docker image, unable to run docker from within the worker container due to permission issue. Specifically the docker group does not appear to be created and worker user ad…
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Hi,
do you have experience running Digital Slide Archive under URL prefix?
We are running a common web service on the main domain (e.g. https://custom.domain.com/) and then running Digital Slide …
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I just tried to run the [Nuclei Detection](https://github.com/DigitalSlideArchive/HistomicsTK/tree/master/histomicstk/cli/NucleiDetection) algorithm that exist in [HistomicsTK](https://github.com/Digi…
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In the screenshot below, the annotation transparency slider is set to zero, yet the centroid-and-size-only (CASO) elements are not affected and retain their "native" fill value.
![image](https://u…
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Oftentimes we want to copy an annotation as-is and paste it in multiple places. This is especially true for things like regions of interest, but also for bounding boxes. This is related to issue Digit…
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Hello, I encountered an error while building histomicstk using Docker (for use in DSA). The error occurred in 'Collecting pyvips (from large image [all])'. I tried to cancel the -- find_link parameter…
XmySz updated
1 month ago
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Hi Devs, thanks for this repo!
Are contributions to the nuclei segmentation part using an external library allowed? For example using CellPose or something similar.
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Since rasterio released v 1.3.11 ~10 hours ago, HistomicsTK installation is failing. Maybe a wheels problem? Any idea why and how to fix it?
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Hi, I recently updated my DSA installation to the current version and am trying to use docker-compose to start an instance. I keep getting the following error:
```
...
Loaded tile source bioformats…