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Hello, I noticed in your article that the HRD status of TCGA breast cancer is obtained through the LST genomic signature. I wanted to ask how it is obtained and whether it varies for different subtype…
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# 生信爱好者周刊(第 103 期):取消论文发表硬性规定,读博变轻松了吗?
这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
[「生信周刊讨论区」](https://github.com/open…
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Hi, how do i get a combined HRD score using the oncoscanR output,
$armlevel
$armlevel$AMP
$armlevel$LOSS
$armlevel$LOH
$armlevel$GAIN
$scores
$scores$LST
$scores$LOH
$scores$TDpl…
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[24.08.2023 12:08:18] jasiu-rozowyczlowiek:
[24.08.2023 12:08:18] jasiu-rozowyczlowiek
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[24.08.2023 12:08:06] jasiu-rozowyczlowiek:
[24.08.2023 12:08:06] jasiu-rozowyczlowiek
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https://mp.weixin.qq.com/s/hq1uj1KIXUaz7yxK5uvAIw
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https://mp.weixin.qq.com/s/98o-tpTViuhyQP8NjYNk8A
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/yannchristinat/oncoscanR
Confirm the following by…
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Hi there, I'm just starting out with variant calling, although familiar with other types of whole genome data (methylome/transcriptome). This is a general question on the best way to use this pipeline…