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I try the "PASTA vignette", and get a error as fowllowing:
######################## code
pbmc dense coercion: allocating vector of size 3.1 GiB
3: In .M2v(x) : sparse->dense coercion: allocati…
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Traceback (most recent call last):
File "/usr/local/lib/python3.8/dist-packages/pandas/core/indexes/base.py", line 3361, in get_loc
return self._engine.get_loc(casted_key)
File "pandas/_lib…
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Hi,
I am new to this but was able to successfully replicate your google colab notebook.
I wonder how could I incorporate human gene symbol instead of mouse.
`text_file = "./data/Muris_gene_r…
apal6 updated
10 months ago
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Hi, I wanted to convert a Seurat object built using mouse scRNA data to a new Seurat object with human orthologs. I would like to perform CellphoneDB analysis on the mouse data, but CellPhoneDB requir…
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- [ ] What is the dts version of dHdt?
- [ ] Add and test setup for human demography & aging
- [ ] Check that ramp.xde includes the basic models
- [ ] Add a realistic human aging module, with utiliti…
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**User story**
As NPG we would like an extra "Contaminated Human Data Access Group" field on the New Study Page so that access to the "likely human" read data that NPG already creates separately.
…
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Does this tool work for other organisms? Since deepvariant is highly sensitive to trained models for human variants.
Have you tested it on other organisms?
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Hi, first of all thank you very much for your work on Pgx!
I'm opening this issue because I am hoping to be able to leverage Pgx's `chess `environment for a project on scaling laws in RL. As part o…
NZ99 updated
4 months ago
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**Link to the page of interest**
https://rdmkit.elixir-europe.org/human_data#processing-and-analysing-human-research-data
**Describe what you would change to the page**
Check if there is any re…
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Hey,
Thanks for the great work: I enjoyed reading the paper, and your proposed iterative improving strategy seems super interesting.
I am interested in the human data you collected (DecomposedCa…