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Hello! I followed the Run single-chain simulations with CALVADOS 3 in README for intrinsically disordered protein then get this error after running submit_ray.py
Traceback (most recent call last):
…
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The S:181-187 area is a known area for moderate improvements, here i found a small KP.3.1.4 branch with S:G184A , i got convinced to propose it when seeing a recent GBW sequence from China.
Out of …
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We want a project for demo that looks like the one from the [slide deck](https://drive.google.com/drive/folders/1qtNPU4N-X09a0S_ZymB5VWj_Lx_tnmo8) (slide 14)
Add the following
- [x] Matt as the spon…
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Hi, i'm using interproscan for functional annotation of new yeast strain.
However, it works and stops repeatedly with an error "ERROR - Command line failed with exit code: 139".
Please help me t…
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RUN:
```
(base) [zhutao@log1 interproscan-5.52-86.0]$ ./interproscan.sh -dp -f tsv -goterms -i test_single_protein.fasta
```
Result
```
10/09/2021 12:44:22:865 Welcome to InterProScan-5.52-8…
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e.g. the query
```SPARQL
SELECT DISTINCT ?item ?itemLabel ?_PubMed_ID
WHERE
{
?item wdt:P31 wd:Q13442814 ;
rdfs:label ?itemLabel .
OPTIONAL { ?item wdt:P698 ?_PubMed_ID. }
FIL…
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This clearly represents an activity:
3'-UTR-mediated mRNA stabilization (GO:0070935)
Definition |
An mRNA stabilization process in which one or more RNA-binding proteins associate with the 3'-un…
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### Page: [Intrinsically disordered proteins](https://rdmkit.elixir-europe.org/intrinsically_disordered_proteins)
In pull request #1249, we are implementing changes to how we handle tools, resulting …
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Hi,
I would like to simulate a disordered protein in complex with a small molecule. I have already obtained the OpenFF-2.1.0 parameters for the small molecule for Gromacs. I noticed that the recommen…
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Is there any issue reading the B-factors from the PDB or internally?
I've noticed that the first residue has a much larger B-factor experimental value than the rest of experimental B-factors and th…