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After discussion with @InaMBerry, some of the below might be possible:
- Marking Primer-induced errors
- This would require parsing the trim_stats files in order to know how much of the primer was a…
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Hi - would it be possible to add an option to the duplicate marking function to only mark optical duplicates? Most PCR-free applications, including most WGS workflows, would benefit from this. Note …
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Open this issue as an aggregation for optimization suggestions.
- [ ] Alignment #47
- [ ] Marking duplicates, BQSR, sorting
- [ ] Metrics
- [ ] Validate Gvcf
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I believe the Matcher class is incorrect marking responses as duplicates as only checking Token and Message ID.
But should also check the Observe option is different (to previous responses).
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```
Provide a way to bulk change alert confidence, such as marking 200 duplicates of an
alert confirmed or false positive.
https://groups.google.com/forum/#!topic/zaproxy-users/gE7htFW6nbQ
```
Orig…
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when using the TAGGING_POLICY different from DontTag.
In particular there are probably subtle bugs regarding the marking of secondary/supplementary/unmapped-mates of duplicates.
I'm happy to add te…
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If a folder is marked as reference, the content will remain as such and untouchable.
When marking as reference, the goal is to have the other files as duplicates in the results.
But sometimes it is …
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- We can do some automatic deduplication, especially by offering completion on names, but users will always have to do some manual work too. For people with same name, they often use phone number as …
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### Pandas version checks
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the [latest version](https://pandas.pydata.org/docs/whatsn…
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If I have marked a file and then make that file into reference, it looks like Dupeguru drops the mark. I would like it to move the mark into the old reference.
The reason is that sometimes I am in …