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# dada2 pipeline for metabarcoding (CO1)
Thanks a lot for your dada2 pipeline, this is really cool. Our research group has been using it for our human microbiome projects. This is really cool.
We …
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* get in contact with Roberto
* what is needed?
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I'm trying to run PIMENTA from Clustering to Consenses (i.e. `RunModules='Clustering,Consensus'`). But, I can't figure out where in the settingsfile.txt file to point to my fastq files that I already …
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Hi @tjcreedy
I am currently trying to implement your tool in my pipeline. I have a COI metabarcoding dataset of community DNA derived from coral reefs, so after denoising and all I have ASVs of va…
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### Description of feature
The current stop-codon detection in ampliseq could be improved and supplemented with frame-shift detection by implementing [MACSE](https://doi.org/10.1093/molbev/msy159). T…
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## CALeDNA
Dataset link: https://ucedna.com/
Region: USA / California
Taxon: Eukaryotes
Type: occurrence
Why is this important: CALeDNA is a project / platform for citizen science eDNA metabarcod…
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How is it best to register used bioinformatic tool/pipelines?
I understood there are some developments for this in ocean best practices, we should look into that.
Through the PacMAN project, O…
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[Qiime 2](http://2.qiime.org/) now offers an interface for third-party plugins. The [plugin creation](https://docs.qiime2.org/2017.2/plugins/developing/) does not seem complicated: the plugin is a pyt…
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It came up in the TDWG [Genomic IG](https://github.com/tdwg/gbwg) discussion that the event core is inadequate to model the needs of the GGBN, but is almost acceptable.
While we all agree that more…
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comments & suggestions