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Having an error come up on my FlowSOM clustering:
> sce1
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Hi!
I previously had working code to make a flowsom object from a flowset, but as of this week it is no longer working. After I compute my flowsom object, I visualized it using PlotStars, but it now…
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Right now you use spectral clustering to generate clusters, but I think adding the ability for the user to choose to use HDBSCAN could be interesting. There are a couple of articles that explain the a…
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I would like to know how to be able to use the features of CATALYST and plotting functions when I am using a different clustering for each cell than the one obtained from the package. In this case, I …
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Hi,
I wanted to plot the cell number per cluster for metaclustering k="meta16" (without any separation of conditions), but the `CATALYST::plotAbundances` always group all 100 FlowSOM codes.
Wo…
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Dear Helena,
is it possible to facet the plots of the `plotScatter` function by metacluster?
I would like to save time when checking the quality of the flowSOM clustering by viewing the results in…
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This is candace on Hadeesha's account again. @cliu72
**Is your feature request related to a problem? Please describe.**
After the Pixie refactoring, the code was changed such that `cluster_counts…
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Hi Helena,
First of all, thank you for a very nice package. I was wondering if there are there any plans for a simple wrapper to produce MST-plots in this package? Or is there a way I can extract i…
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**Is your feature request related to a problem? Please describe.**
The `compute_pixel_cluster_channel_avg` function takes as long as the actual mapping of pixels. This isn't a big deal for small data…
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Hello Helena,
Thank you again for this package. It's helping me a lot interpreting my spectral flow data.
The following it's not an issue with t
he package but I'd like to know how you would pr…