-
Turnbaugh, P. J.
Ridaura, V. K.
Faith, J. J.
Rey, F. E.
Knight, R.
Gordon, J. I.
2009.
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
http://dx.d…
-
Hi @Meghana9854 @roseedwin , I just came across your amazing paper, and I wanted to implement the approach you proposed for my soil shotgun data. Looking upon your methodology, it seem you relied on a…
-
Activity to be done as a team with @LLansing , @glchn , @jlobri , @jonathho , @MorganCunningham , @linzhi-wu
The goal is to have a single workflow that is used by all the team and that includes th…
-
I am using nasal microbiome data for the deseq analysis in Phyloseq. This is not 16s data, but very similar. It is called IS-pro and instead of sequencing the 16s region it measures the length of 16s-…
-
Hi,
I just trying to apply _diff_analysis_ function to the phyloseq object built with picrust2-predicted pathway abundance table.
The otu-table is like this:
pathway | sampleD1-10F | sampl…
-
-
Hi @gtonkinhill, thanks for the really detailed analyses. This looks like it took a lot of time to put together, and I genuinely appreciate the public release on Github. I have two concerns and some q…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mkbwang/ADAPT
Confirm the following by editing ea…
-
-
Hi there, thanks for sharing this tool! It worked really well with my data after checking the PCoA plot. I have two questions regarding the downstream analysis though:
1. After using the tool and n…