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I fail to export spectra from a MS fragger search of TIMS TOF data as PNG file. Any suggestion how this could be resolved?
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/CooperstoneLab/MS2extract
Confirm the following b…
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Hi MSGF+ Team
Thanks for your work in MSGF+.
** I get mass spectrometry data from Bruker TimsTOF and want to do database search using MSGF+.**
**At first, I convert the *.d files into mzML. …
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### What is the QC term's name?
Peak Width, Retention Time of Targeted Peptide Precursors ,Precursor Ion Chromatogram ,Charge State Distribution of Identified Peptide Precursors, Intensity Variation …
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i am working on storing some MS/MS data in Spectra objects. I was interested in storing the adduct type, so ideally when this is exported to msp or mgf (or other) that adduct type is exported with th…
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Hello!
I have 2 things which I think could be useful to implement in the CV tool.
1. Similiar to the quick add function for NMR, MS,.. in the description window, I think a button for CV would make…
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Hello, I was trying to cluster mzXML files from https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=88a7dfeeecb74131a6d6bfb7a9db0a46 in WSL:Ubuntu-22.04 but it does not seem to recognize any spectra.…
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Hi Johannes,
You see I am your fans now. I am testing your docker container for doing MS/MS search. However, I encountered issues with loading the hmdb spectra XML data.
In brief, I have downlo…
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Hi,
I would like to add some more timings to the output, so I added some user counters, and in the function to be benchmarked, I record some timing information for certain block of code.
The out…
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I have been trying to read in NIST MS/MS spectra using a function that looks like this:
`d spectraVariables(d)`
`
[1] "msLevel" "rtime" "acquisitionNum" …