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rformassspectrometry
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Spectra
Low level infrastructure to handle MS spectra
https://rformassspectrometry.github.io/Spectra/
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Add a function to append multiple spectra variables to a `Spectra`
#342
jorainer
opened
2 days ago
3
Support chunk-wise processing in containsMz
#341
jorainer
closed
2 days ago
0
Default serial backend on `containsMz` and `containsNeutralLoss` make them unusable on Windows
#340
Adafede
closed
3 days ago
9
Update or create spectra variables within processing functions
#339
ismaRP
closed
2 weeks ago
2
Add default implementations for MsBackend methods
#338
jorainer
opened
4 weeks ago
0
feat: add precursorMz<- replacement method (issue #336)
#337
jorainer
closed
4 weeks ago
0
refining precursorMz
#336
cbroeckl
closed
3 weeks ago
3
feat: add new method backendRequiredSpectraVariables
#335
jorainer
closed
1 month ago
0
Issue with `MsBackendCompDb`
#334
philouail
closed
1 month ago
1
Check and fix backends for the new Spectra version
#333
jorainer
opened
1 month ago
1
Add new extractByIndex method
#332
jorainer
closed
1 month ago
1
Restructure documentation
#331
jorainer
closed
1 month ago
2
Improve and fix the Spectra constructor method
#330
jorainer
closed
2 months ago
1
feat: add a function to coerce from Spectra to MSnbase::MSpectra
#329
jorainer
closed
2 months ago
1
Change estimatePrecursorIntensity to a method
#328
jorainer
closed
3 months ago
0
Interpretation of matchSpectra() and plotting results of plotSpectraMirror()
#327
v-v1150n
opened
4 months ago
0
feat: add new `filterPeaksRanges` function
#326
jorainer
closed
4 months ago
2
Coerce Spectra to DataFrame
#325
lgatto
closed
4 months ago
3
adduct type
#324
cbroeckl
opened
6 months ago
1
Add a method to change the data storage base path for on-disk backends
#323
jorainer
closed
6 months ago
0
MS-imaging support / MsBackendImzML
#322
RogerGinBer
opened
6 months ago
3
Add possibility to change the file path for a `MsBackendMzR`
#321
jorainer
closed
6 months ago
2
Suggesion for combinePeaksData
#320
DrRuiLi
closed
6 months ago
4
Visualize, use plotSpectraMirror function to draw spectrum matching results
#319
v-v1150n
closed
6 months ago
1
Fix is.vector()
#318
lgatto
opened
8 months ago
3
feat: add estimatePrecursorMz function (issue #315)
#317
jorainer
closed
8 months ago
3
Smoothing along the time domain (chromatographic peaks)
#316
breidan
closed
8 months ago
1
Adjust precursor m/z values for MS2 spectra from Waters instruments
#315
jorainer
closed
8 months ago
5
updated filepath in filterFourierTransformArtefacts example
#314
stanstrup
closed
8 months ago
0
AnnotationFilter-based filtering of Spectra objects?
#313
jorainer
closed
8 months ago
3
Introducing `filterRanges` Function and Discussion on a possible `filterSimilarities`
#312
philouail
closed
8 months ago
10
Problem with MGF import - object: mz values have to be sorted increasingly
#311
felipe-mansoldo
closed
9 months ago
3
Problem with Waters raw file
#310
sardnar
opened
9 months ago
2
add entropy functions
#309
mar-garcia
closed
9 months ago
1
Add a method to calculate the entropy of all spectra
#308
jorainer
closed
9 months ago
1
Ensure all methods working on peaksData use the chunk-wise processing
#307
jorainer
opened
1 year ago
0
Enable chunk-wise processing for all peaks data functions
#306
jorainer
closed
11 months ago
4
fix: `bin` function
#305
philouail
closed
1 year ago
1
Memory issues and (potential) chunk-wise processing of peaks data
#304
jorainer
closed
11 months ago
8
`bin` function *create* peaks of intensity 0
#303
philouail
closed
1 year ago
4
`filterFourierTransformArtefacts` fails when used with other processings
#302
Adafede
closed
1 year ago
4
Add documentation on MS entropy-based similarity calculation
#301
jorainer
closed
1 year ago
4
Add filterPrecursorMaxIntensity and filterPrecursorIsotopes functions
#300
jorainer
closed
1 year ago
1
Filter precursor peaks
#299
jorainer
closed
1 year ago
0
feat: add scalePeaks (issue #291)
#298
jorainer
closed
1 year ago
0
Add peak variable support to MsBackendMemory and MsBackendDataFrame
#297
jorainer
closed
1 year ago
3
Combine peaks
#296
jorainer
closed
1 year ago
3
New feature: group and summarised Spectra
#295
lgatto
opened
1 year ago
2
Import mspLib format
#294
Slycopersicum
closed
1 year ago
4
Add a filterPrecursorPeaks function
#293
jorainer
closed
1 year ago
5
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