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rformassspectrometry
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Spectra
Low level infrastructure to handle MS spectra
https://rformassspectrometry.github.io/Spectra/
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Coerce Spectra to DataFrame
#325
lgatto
opened
4 days ago
0
adduct type
#324
cbroeckl
opened
1 month ago
1
Add a method to change the data storage base path for on-disk backends
#323
jorainer
closed
1 month ago
0
MS-imaging support / MsBackendImzML
#322
RogerGinBer
opened
1 month ago
3
Add possibility to change the file path for a `MsBackendMzR`
#321
jorainer
closed
1 month ago
2
Suggesion for combinePeaksData
#320
WallFacerLR
closed
1 month ago
4
Visualize, use plotSpectraMirror function to draw spectrum matching results
#319
v-v1150n
closed
1 month ago
1
Fix is.vector()
#318
lgatto
opened
3 months ago
3
feat: add estimatePrecursorMz function (issue #315)
#317
jorainer
closed
3 months ago
3
Smoothing along the time domain (chromatographic peaks)
#316
breidan
closed
3 months ago
1
Adjust precursor m/z values for MS2 spectra from Waters instruments
#315
jorainer
closed
3 months ago
5
updated filepath in filterFourierTransformArtefacts example
#314
stanstrup
closed
3 months ago
0
AnnotationFilter-based filtering of Spectra objects?
#313
jorainer
closed
3 months ago
3
Introducing `filterRanges` Function and Discussion on a possible `filterSimilarities`
#312
philouail
closed
3 months ago
10
Problem with MGF import - object: mz values have to be sorted increasingly
#311
felipe-mansoldo
closed
4 months ago
3
Problem with Waters raw file
#310
sardnar
opened
4 months ago
2
add entropy functions
#309
mar-garcia
closed
5 months ago
1
Add a method to calculate the entropy of all spectra
#308
jorainer
closed
4 months ago
1
Ensure all methods working on peaksData use the chunk-wise processing
#307
jorainer
opened
7 months ago
0
Enable chunk-wise processing for all peaks data functions
#306
jorainer
closed
7 months ago
4
fix: `bin` function
#305
philouail
closed
7 months ago
1
Memory issues and (potential) chunk-wise processing of peaks data
#304
jorainer
closed
6 months ago
8
`bin` function *create* peaks of intensity 0
#303
philouail
closed
7 months ago
4
`filterFourierTransformArtefacts` fails when used with other processings
#302
Adafede
closed
9 months ago
4
Add documentation on MS entropy-based similarity calculation
#301
jorainer
closed
10 months ago
4
Add filterPrecursorMaxIntensity and filterPrecursorIsotopes functions
#300
jorainer
closed
1 year ago
1
Filter precursor peaks
#299
jorainer
closed
10 months ago
0
feat: add scalePeaks (issue #291)
#298
jorainer
closed
1 year ago
0
Add peak variable support to MsBackendMemory and MsBackendDataFrame
#297
jorainer
closed
9 months ago
3
Combine peaks
#296
jorainer
closed
1 year ago
3
New feature: group and summarised Spectra
#295
lgatto
opened
1 year ago
2
Import mspLib format
#294
Slycopersicum
closed
1 year ago
4
Add a filterPrecursorPeaks function
#293
jorainer
closed
10 months ago
5
Add fusePeaks function
#292
jorainer
closed
1 year ago
8
Add scalePeaks function
#291
jorainer
closed
1 year ago
0
Add filterPrecursorMaxIntensity and filterPrecursorIsotopes functions
#290
AharoniLab
closed
1 year ago
4
API CHANGE: support peaksData to return data.frame or matrix
#289
jorainer
opened
1 year ago
11
Split Spectra documentation into smaller chunks
#288
jorainer
opened
1 year ago
0
Add support for peak annotations
#287
jorainer
closed
1 year ago
0
Added 'reduceSpectra' function
#286
AharoniLab
closed
1 year ago
4
docs: add example for spectra processing (remove precursor peaks)
#285
jorainer
closed
1 year ago
1
Version 1.8.x Spectra objects not readable by earlier package versions?
#284
AharoniLab
closed
1 year ago
2
Add a deisotope function
#283
jorainer
closed
1 year ago
0
Add a reduce method
#282
jorainer
closed
1 year ago
4
Add a filterPrecursorIsotopes method
#281
jorainer
closed
1 year ago
4
Add a filterUniquePrecursorMz method
#280
jorainer
closed
1 year ago
4
udpate news file
#279
lgatto
closed
1 year ago
0
Pull from devel
#278
lgatto
closed
1 year ago
0
Fix filter precursor scan
#277
lgatto
closed
1 year ago
0
fix: selectSpectraVariables,MsBackendMemory
#276
jorainer
closed
1 year ago
1
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