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rformassspectrometry
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Spectra
Low level infrastructure to handle MS spectra
https://rformassspectrometry.github.io/Spectra/
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filterMzValues to keep/remove all peaks matching provided m/z
#275
jorainer
closed
1 year ago
0
filterMzValues
#274
mar-garcia
closed
1 year ago
10
Add MsBackendRawFileReader in backend listing
#273
cpanse
closed
1 year ago
0
Add backendBpparam method and minor tweaks
#272
jorainer
closed
1 year ago
0
Check if a backend supports parallel processing
#271
jorainer
closed
1 year ago
7
Fix issue with empty MsBackendMemory and automatic peak variable detection in MsBackendMemory
#270
jorainer
closed
1 year ago
1
Re-evaluate automatic detection of peaks variables
#269
jorainer
closed
1 year ago
1
`setBackend` to `MsBackendMemory` fails for empty `Spectra`
#268
meowcat
closed
1 year ago
2
MzBackendMzR misleading error with empty file list and misleading behavior with `files` argument
#267
meowcat
closed
1 year ago
3
Add a vignette describing how to implement a new MsBackend
#266
jorainer
closed
1 year ago
1
Add first content to the MsBackend howto
#265
jorainer
closed
1 year ago
1
Externalize hdf5 backend?
#264
meowcat
closed
1 year ago
3
Replace <= and >= with MsCoreUtils::between
#263
jorainer
closed
1 year ago
0
A tutorial and specification for building backends
#262
meowcat
closed
1 year ago
16
Add validator method to MsBackend checking for ordered m/z values
#261
jorainer
closed
1 year ago
2
Function to find/visualise contaminants
#260
lgatto
opened
1 year ago
2
fix: bug in containsMz() when mz is not sorted (see #258)
#259
lgatto
closed
1 year ago
4
Bug in containsMz()
#258
lgatto
closed
1 year ago
7
pickPeaks fails to centroid if no flanking zeroes are present
#257
RogerGinBer
opened
1 year ago
4
filterPrecursorMzRange
#256
cbroeckl
opened
1 year ago
2
refactor: use dplyr::between instead of MsCoreUtils::between
#255
jorainer
closed
1 year ago
1
fix: MsBackendMzR of lenght 0
#254
jorainer
closed
1 year ago
1
To extract method info from mzXML file(s)?
#253
linlennypinawa
closed
1 year ago
1
compareSpectra inconsistency?
#252
Adafede
closed
1 year ago
4
An attempt to convert a spectra file to a data frame
#251
linlennypinawa
closed
1 year ago
7
feat: add chunkapply (issue #249)
#250
jorainer
closed
1 year ago
2
"chunkyfied" processing
#249
jorainer
closed
1 year ago
2
Discussion: spectraData,spectraData<- to support also data.frame or other two-dimensional data structues
#248
jorainer
opened
1 year ago
0
Add new default in memory backend MsBackendMemory
#247
jorainer
closed
1 year ago
5
A more efficient in-memory backend
#246
jorainer
closed
1 year ago
3
fix: fix bug in setBackend if Spectra is empty
#245
jorainer
closed
1 year ago
0
feat: add uniqueMsLevels method
#244
jorainer
closed
1 year ago
0
docs: expand examples and description on bin
#243
jorainer
closed
2 years ago
1
Function for alignment of Spectra
#242
michaelwitting
closed
2 years ago
6
How to plot an EIC with the Spectra package?
#241
wkumler
closed
2 years ago
2
Add peaksVariables function
#240
jorainer
closed
2 years ago
5
compareSpectra limits using joinPeaksGnps
#239
LiesaSalzer
opened
2 years ago
4
New peaksVariables function
#238
jorainer
closed
2 years ago
0
feat: add neutralLoss method (issue #236)
#237
jorainer
closed
2 years ago
5
Create neutralLoss spectra
#236
jorainer
closed
1 year ago
6
docs: add examples for combineSpectra to the vignette
#235
jorainer
closed
2 years ago
0
Down-sampling spectra
#234
cutleraging
opened
2 years ago
3
feat: add spectraVariableMapping generic
#233
jorainer
closed
2 years ago
1
Add filterPrecursorMzValue to support filtering by multiple m/z values
#232
jorainer
closed
2 years ago
4
Ms backend cached
#231
jorainer
closed
2 years ago
0
filterPrecursorMz with multiple precursor m/z values
#230
jorainer
opened
2 years ago
1
Export Spectra as HDF5 format (.h5)?
#229
Don86
opened
2 years ago
6
Allow transformations when "joinPeaks'
#228
mengchen18
opened
2 years ago
1
Add test suite framework and tests to check all spectra variables
#227
jorainer
closed
2 years ago
3
Allow transformations when "joinPeaks'
#226
mengchen18
closed
2 years ago
0
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