-
**Bug description**
**Reproduction steps**
```python
import esm
model, alphabet = esm.pretrained.esm_msa1b_t12_100M_UR50S()
batch_converter = alphabet.get_batch_converter()
batch_size=5
p…
-
Hello, can you please explain, what the relations between your Kanonizo test case prioritization tool and the TCP tool with the same name described in the attached paper?
Are they connected somehow o…
-
**Bug description**
Running the example command for the MSA Transformer in the Variant Prediction example in https://github.com/facebookresearch/esm/tree/main/examples/variant-prediction results in a…
-
Topiary and Vaxrank have different end users but it would be nice nice to reuse some of the minimal epitope ranking logic in topiary within the SLP ranking logic in Vaxrank.
-
This issue will be to draw ideas on possible ways to quantify the changes in the interaction map of budding yeast once one mutation is made, from the SATAy DATA output.
-
I'm trying to run MuPeXI pipeline with test data. There seems to be a problem with NetMHCpan, but I can't seem to fix it. I have checked the paths requested by the tool in its installation, as well as…
-
The first paper to arise from the Open Source Malaria Consortium is [published today in ACS Central Science](http://pubs.acs.org/doi/full/10.1021/acscentsci.6b00086), describing Series 1. Congratulati…
-
Hi ,
I hope this message finds you well. I have been reading your research work and have some questions regarding the results obtained from your protein mutation prediction model, particularly concer…
-
This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
-
Hello,
While running mhcflurry, I get this error (shown in the last few lines)
2022-08-11 01:32:37,063 - isovar.effect_prediction:112 - INFO - Keeping 0 effects with predictable AA sequences for V…