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Evolutionary Scale Modeling (esm): Pretrained language models for proteins
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Runtime in half precision
#692
Hrovatin
opened
2 weeks ago
0
[BUG] Fasta header with special characters alter output path
#691
jspaezp
opened
2 weeks ago
0
Missing CUDA availability check in ESM-1v example
#688
ebeurer
opened
1 month ago
0
Fine tuning on sequencing classification data
#686
BIOBRICK
opened
1 month ago
0
Different result with esmfold server
#683
lzygitk7
opened
1 month ago
1
offset=24 in [Zero-shot variant prediction with protein language models]
#680
yinshiyi
opened
2 months ago
0
Why the inpu size of embedding is 33?
#679
fulacse
opened
2 months ago
1
Contact prediction for multimeric proteins
#678
AnjaliSetiya
opened
2 months ago
1
Failed to build openfold
#677
AlejandroSanchezCano
opened
2 months ago
2
Error when predicting contacts for heterodimer
#674
AnjaliSetiya
opened
2 months ago
0
RuntimeError
#670
tonyageall
opened
3 months ago
5
the specific code of the ESM2 model
#669
GriffithLin
opened
3 months ago
0
Query on Alphabet Consistency Across Different Scales of ESM2 Models [8M, 35M, 150M, 650M, 3B, 150B]
#668
CNwangbin
opened
3 months ago
0
Embedding
#661
anonimoustt
closed
4 months ago
0
fold.py in naming pdb file
#660
yzhang-github-pub
opened
4 months ago
0
add max len option to BatchConverter
#658
timydaley
closed
4 months ago
1
ESMFold for multimer fails when using HuggingFace installation
#656
eliottpark
opened
5 months ago
1
How to train LinearProjectionDistogramModel for my data?
#655
hasaiki136
opened
5 months ago
0
requests.exceptions.SSLError :: Streamlit
#654
tcchola
opened
5 months ago
0
Expecting multiple model of single sequence input
#653
Hossen-sahadot97
closed
5 months ago
0
AttributeError: module 'deepspeed' has no attribute 'comm'
#652
YvetteJxy
opened
5 months ago
3
how to input cropped protein for ESM-2 ?
#651
GriffithLin
opened
5 months ago
1
[Variant effect prediction] Fix CPU inference
#650
anton-bushuiev
opened
5 months ago
1
index out of bounds during zero-shot with msa1b
#649
Maxwell-downtown
opened
5 months ago
0
ESM2 pretrain
#648
ZJL0111
opened
5 months ago
0
HuggingFace EsmForProteinFolding inference raises exception on Windows
#647
shimooper
opened
6 months ago
1
Move the scripts folder into esm package and revise on einops version
#645
gefei-qian-nih
opened
6 months ago
1
esm2_t6_8M_UR50D model results in an empty representation
#643
Amels404
opened
6 months ago
1
ESMFold fails for some long sequence?
#641
yuanqm55
opened
6 months ago
0
Can you share a dataset of ESM2 coding for UniRef90?
#640
JiangLab2020
opened
6 months ago
1
"model_name" is not defined - ESM-2
#638
bdabykov
closed
7 months ago
1
esm-fold interface: SyntaxError: invalid syntax
#637
johnnytam100
opened
7 months ago
1
How to convert folded_positions -> PDB file format?
#636
johnnytam100
opened
7 months ago
1
Discrepancy between ESMFold predicted `distogram_logits` and final output atomic coordinates
#635
Hejl19
opened
7 months ago
0
ESMFold API SSL Ceritifcate Error
#634
falatfernando
closed
6 months ago
2
Inverse folding samples from all tokens instead of just amino acids
#633
spenceforce
opened
8 months ago
0
Getting multiple structures from one esmfold prediction?
#632
johnnytam100
opened
8 months ago
0
SSL certificate problem: unable to get local issuer certificate
#629
coliva92
opened
8 months ago
3
The length limitation of protein sequences for different size of ESM2 (8M, 35M, 150M,,,,,,,,)?
#628
liudan111
opened
8 months ago
1
Einops 0.7.0 syntax error
#626
ivanpmartell
opened
8 months ago
0
Locally Installed v1 Pretrained Model for Structure Prediction
#625
SkwisgaarSkwigelf
opened
8 months ago
0
Erroneous characters generated by ESM-IF1
#623
JonathanLV123
opened
9 months ago
0
FlashAttention support
#622
kklemon
opened
9 months ago
0
No module named 'torch._six'
#621
DipBobDar
opened
9 months ago
2
Dataset for Remote Homology Evaluation
#620
amoldwin
opened
9 months ago
0
Questions about the precomputed embeddings
#619
Lisa314159
opened
9 months ago
0
docs: fixing citation rendering
#618
drugilsberg
opened
9 months ago
1
Fst
#617
LeonHermann322
closed
9 months ago
1
PDB files not readable because chemical element symbol in columns 77-78 is incorrectly left-justified
#616
elmar-k
opened
9 months ago
0
Error while compute embeddings in bulk from FASTA
#615
smruti241
closed
9 months ago
2
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