facebookresearch esm issues

facebookresearch / esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

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Warning bieng raised with 'cpu-offloading' option and generating structure takes forever

#699 amani-acog opened 3 months ago
0
ESMFold crashing with specific FASTA files

#698 npcooley opened 4 months ago
0
esmfold_v1() error in pl_upgrades branch for pytorch v2 and cuda v12

#696 MaxChu719 opened 4 months ago
1
An error occurred when configuring the esmfold environment

#695 20191864241 opened 4 months ago
0
Codes to fine-tune ESM-IF1

#694 tuln128 opened 4 months ago
0
Runtime in half precision

#692 Hrovatin opened 5 months ago
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[BUG] Fasta header with special characters alter output path

#691 jspaezp opened 5 months ago
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Missing CUDA availability check in ESM-1v example

#688 ebeurer opened 6 months ago
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Fine tuning on sequencing classification data

#686 BIOBRICK opened 6 months ago
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Different result with esmfold server

#683 lzygitk7 opened 6 months ago
1
offset=24 in [Zero-shot variant prediction with protein language models]

#680 yinshiyi opened 7 months ago
0
Why the inpu size of embedding is 33?

#679 fulacse opened 7 months ago
1
Contact prediction for multimeric proteins

#678 AnjaliSetiya opened 7 months ago
1
Failed to build openfold

#677 AlejandroSanchezCano opened 7 months ago
3
Error when predicting contacts for heterodimer

#674 AnjaliSetiya opened 7 months ago
0
RuntimeError

#670 tonyageall opened 8 months ago
5
the specific code of the ESM2 model

#669 GriffithLin opened 8 months ago
0
Query on Alphabet Consistency Across Different Scales of ESM2 Models [8M, 35M, 150M, 650M, 3B, 150B]

#668 CNwangbin opened 8 months ago
0
Embedding

#661 anonimoustt closed 9 months ago
0
fold.py in naming pdb file

#660 yzhang-github-pub opened 9 months ago
0
add max len option to BatchConverter

#658 timydaley closed 9 months ago
1
ESMFold for multimer fails when using HuggingFace installation

#656 eliottpark opened 10 months ago
1
How to train LinearProjectionDistogramModel for my data？

#655 hasaiki136 opened 10 months ago
0
requests.exceptions.SSLError :: Streamlit

#654 tcchola opened 10 months ago
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Expecting multiple model of single sequence input

#653 Hossen-sahadot97 closed 10 months ago
0
AttributeError: module 'deepspeed' has no attribute 'comm'

#652 YvetteJxy opened 10 months ago
3
how to input cropped protein for ESM-2 ?

#651 GriffithLin opened 10 months ago
1
[Variant effect prediction] Fix CPU inference

#650 anton-bushuiev opened 10 months ago
1
index out of bounds during zero-shot with msa1b

#649 Maxwell-downtown opened 10 months ago
0
ESM2 pretrain

#648 ZJL0111 opened 10 months ago
0
HuggingFace EsmForProteinFolding inference raises exception on Windows

#647 shimooper opened 11 months ago
1
Move the scripts folder into esm package and revise on einops version

#645 gefei-qian-nih opened 11 months ago
1
esm2_t6_8M_UR50D model results in an empty representation

#643 Amels404 opened 11 months ago
1
ESMFold fails for some long sequence?

#641 yuanqm55 opened 11 months ago
0
Can you share a dataset of ESM2 coding for UniRef90?

#640 JiangLab2020 opened 11 months ago
1
"model_name" is not defined - ESM-2

#638 bdabykov closed 12 months ago
1
esm-fold interface: SyntaxError: invalid syntax

#637 johnnytam100 opened 1 year ago
1
How to convert folded_positions -> PDB file format?

#636 johnnytam100 opened 1 year ago
1
Discrepancy between ESMFold predicted `distogram_logits` and final output atomic coordinates

#635 Hejl19 opened 1 year ago
0
ESMFold API SSL Ceritifcate Error

#634 falatfernando closed 11 months ago
2
Inverse folding samples from all tokens instead of just amino acids

#633 spenceforce opened 1 year ago
0
Getting multiple structures from one esmfold prediction?

#632 johnnytam100 opened 1 year ago
0
SSL certificate problem: unable to get local issuer certificate

#629 coliva92 opened 1 year ago
3
The length limitation of protein sequences for different size of ESM2 (8M, 35M, 150M,,,,,,,,)?

#628 liudan111 opened 1 year ago
1
Einops 0.7.0 syntax error

#626 ivanpmartell opened 1 year ago
0
Locally Installed v1 Pretrained Model for Structure Prediction

#625 SkwisgaarSkwigelf opened 1 year ago
0
Erroneous characters generated by ESM-IF1

#623 JonathanLV123 opened 1 year ago
0
FlashAttention support

#622 kklemon opened 1 year ago
0
No module named 'torch._six'

#621 DipBobDar opened 1 year ago
2
Dataset for Remote Homology Evaluation

#620 amoldwin opened 1 year ago
0