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esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
MIT License
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Questions about the precomputed embeddings
#619
Lisa314159
opened
1 year ago
0
docs: fixing citation rendering
#618
drugilsberg
opened
1 year ago
1
Fst
#617
LeonHermann322
closed
1 year ago
1
PDB files not readable because chemical element symbol in columns 77-78 is incorrectly left-justified
#616
elmar-k
opened
1 year ago
0
Error while compute embeddings in bulk from FASTA
#615
smruti241
closed
1 year ago
2
Loading Embeddings error Supervised variant prediction with ESM
#614
CwilsonBroad
opened
1 year ago
2
Is facebook going to discontinue the esm development?
#611
johnnytam100
opened
1 year ago
2
Added a basic Dockerfile to improve dev experience
#610
ankitvgupta
opened
1 year ago
4
EsmForSequenceClassification does not support gradient checkpointing
#606
Amelie-Schreiber
opened
1 year ago
1
Inverse Folding Training Dataset
#605
WrViajero
opened
1 year ago
0
There is abnormal hot line in the embedding along the sequence length dimension?
#599
chemgeeklian
opened
1 year ago
0
add flag for torch device
#596
misko-diffuse
opened
1 year ago
1
How do we represent a deletion event in ESM-1v?
#595
Chonghao98
opened
1 year ago
2
How to install esmfold for A100 on cuda 10.1
#594
linda5mith
closed
1 year ago
3
Sample source for ESM metagenomic atlas records
#593
ntnn19
closed
1 year ago
1
ERROR: Could not find a version that satisfies the requirement openfold (unavailable) (from versions: 0.0.1)
#592
xiha-haxi
opened
1 year ago
1
Local installation help?
#590
immunoliver
closed
1 year ago
4
How to use Zero-shot variant prediction for other protein sequences
#588
geng-lee
opened
1 year ago
3
ESM-IF and ESMFold in the same conda environnment
#586
Baldwin-disso
opened
1 year ago
0
Google Colab "TypeError: 'str' object is not callable"
#584
DaRinker
closed
1 year ago
0
Difference between embeddings fetched from api vs embeddings calculated locally
#583
zas97
opened
1 year ago
0
Provide predicted aligned error (PAE) for locally folded proteins
#582
jolakopec
opened
1 year ago
1
[Feature] MSA Transformer implementation of self_attn_mask
#579
rmaguire31
opened
1 year ago
0
Make programming language reporting less confusing. 😵💫
#578
scandido
closed
1 year ago
0
How to install the esm-fold interface?
#577
johnnytam100
opened
1 year ago
3
guard torch_scatter dependency
#576
rmrao
closed
1 year ago
0
ValueError: too many values to unpack (expected 2)
#575
limpidzhao
opened
1 year ago
1
How to use ESM models to generate new protein sequences similar to the training set
#574
francescopatane96
closed
1 year ago
6
Error installing OpenFold
#573
DaRinker
closed
1 year ago
2
Fst
#572
LeonHermann322
closed
1 year ago
1
confused about the model used
#570
daisykuma22
opened
1 year ago
1
Update util.py
#569
latticetower
closed
1 year ago
2
Methods to plot/visualize structure for generated protein
#567
adaga06
opened
1 year ago
0
Installation Error - OpenFold
#564
tamimmurad
opened
1 year ago
4
RuntimeError: "LayerNormKernelImpl" not implemented for 'Half'
#562
ziyujiang818
opened
1 year ago
2
Can't run ESMFold
#561
melody666666
opened
1 year ago
0
Folded structure from `esm-fold` has overlapping atoms
#560
em255
opened
1 year ago
1
details about finetuning
#557
xtzhang0216
opened
1 year ago
0
Weird error when computing embedding for sequences
#554
Joey-Xue
closed
1 year ago
0
NameError: name 'PartialState' is not defined
#553
francescopatane96
closed
1 year ago
1
v2023_02 tarballs have less structures than listed in metadata-rc2.parquet
#552
Khalimat
opened
1 year ago
2
Linux process status is D
#551
bj600800
opened
1 year ago
1
RAM crashes by fine tuning with pretrain ESM model on large dataset.
#548
amalislam675
opened
1 year ago
3
Issue when building wheel? Not sure if on my end
#547
bpizzano
opened
1 year ago
2
KeyErroer: 'States'
#546
liaojing1111
opened
1 year ago
0
Check if partial embeddings file exist before recomputing
#545
JuLieAlgebra
closed
1 year ago
1
esm2 with .csv files
#544
nayeemmz
closed
1 year ago
3
Potential source of GPU memory leak in `ESMFold`
#543
amorehead
closed
1 year ago
1
Training codes for ESM inverse folding
#541
adrienchaton
opened
1 year ago
3
Error when importing batch_encode_sequences
#539
yangkky
opened
1 year ago
0
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