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Evolutionary Scale Modeling (esm): Pretrained language models for proteins
MIT License
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Fix MSA reading in predict.py
#538
alex-hh
opened
1 year ago
2
AttributeError: 'NoneType' object has no attribute 'arch'
#537
linyuheng594
opened
1 year ago
1
Fix small typo
#536
amorehead
closed
1 year ago
2
Torch module no longer supported
#535
thype2000
opened
1 year ago
5
Question about ESM-1v results.
#532
elttaes
closed
2 months ago
1
'esm.pretrained' has no attribute 'esm2_t6_8M_UR50D'
#531
LZhang98
opened
1 year ago
2
Canonicalize all license headers, small README fixes
#529
tomsercu
closed
1 year ago
1
Code release for protein programming language paper
#528
brianhie
closed
1 year ago
0
Code release for "Language Models Generalize Beyond Natural Proteins".
#527
robert-verkuil
closed
1 year ago
0
Fix link and repeat Atlas license
#526
tomsercu
closed
1 year ago
0
ESM2 pretrained model in torch hub not accessible
#525
lordim
closed
1 year ago
0
'esm-fold' error from command line execution
#521
amoroso2
opened
1 year ago
1
ESM is failed for the protein Ccnd1 (Q790L7)
#520
hust220
closed
1 year ago
1
esm_contact_prediction.ipynb -FileNotFoundError
#519
313king
closed
1 year ago
2
400 Bad Request for foldseekdb
#518
mjoh223
opened
1 year ago
3
when i use esm_contact_prediction.ipynb ,it has a ' ModuleNotFoundError '
#517
313king
closed
1 year ago
3
Add atlas bulk embeddings and v2023_02 backfills
#516
w3ntinglu
closed
1 year ago
0
Code "Language models generalize beyond natural proteins"
#515
zas97
closed
1 year ago
2
Could you share the datasets used for testing zero-shot prediction ability of inverse folding model?
#513
LTEnjoy
opened
1 year ago
0
Update atlas science citation
#512
tomsercu
closed
1 year ago
0
ModuleNotFoundError: No module named 'esm.esmfold' after running esmfold_inference.py
#511
JasperGeissler
closed
1 year ago
1
HTTP Error 403 when downloading some Atlas tarballs via aria2c
#508
naailkhan28
closed
1 year ago
2
Atlas update v2023_02
#505
tomsercu
closed
1 year ago
0
methods to plot UMAP for ~200,000 protein structures
#502
avilella
opened
1 year ago
2
'GVPTransformerModel' object has no attribute 'num_layers'
#501
bg-uni
opened
1 year ago
1
Broken/outdated URIs in contact_prediction.ipynb
#500
DanBuchan
closed
1 year ago
1
ESM-IF sampling for dimer
#499
adrienchaton
opened
1 year ago
0
Create missing __init__.py file in model module
#498
moritzschaefer
closed
1 year ago
3
allow the user to select a CUDA device when running esmfold_inference.py
#497
decarboxy
closed
1 year ago
2
Release ESMFold IPA only models
#496
ebetica
closed
1 year ago
0
Padding in MSA can lead to inconsistent results compared to MSA without padding
#491
huangtinglin
opened
1 year ago
0
How to generate/extract .pkl file when using ESMFold multimer modeling?
#489
genomicsgroup
opened
1 year ago
0
Fix sampling and scoring device bugs
#488
naailkhan28
closed
1 year ago
0
The device problem when running the ESM-IF
#487
a96123155
opened
1 year ago
1
How to evaluate the confidence of a multimer ?
#484
genomicsgroup
opened
1 year ago
3
ESMFold - Masking specific residues in input FASTA?
#483
amorehead
closed
1 year ago
2
Issue with Typing-extensions during run of batch submission.
#481
coopersvajda
closed
1 year ago
4
Hey There,
#480
coopersvajda
closed
1 year ago
0
CUDA error
#479
sbassi
closed
1 year ago
4
ESM atlas length limit
#477
y-hwang
opened
1 year ago
4
pre-train with ELECTRA rather than BERT
#476
Joseph-Vineland
closed
1 year ago
3
touching up the readmes a bit regarding Atlas and blogpost
#475
tomsercu
closed
1 year ago
0
RuntimeError: File cannot be opened
#474
HyprValent
closed
1 year ago
1
ESM-IF1 installation
#473
sahakyanhk
closed
1 year ago
1
Questions about row self-attention implementation
#472
gdolsten
opened
1 year ago
0
Initialization of paired representation inputs to the ESMFold folding block
#471
amyxlu
closed
1 year ago
3
Demo (ESM-MSA-1b for variant prediction) yields inconsistent mutant positions between original sequence and processed MSA
#470
kerrding
opened
1 year ago
1
Error while installing ESM-2
#461
anpanche
closed
1 year ago
2
fair-esm 1.0.3 does not provide the extra 'esmfold'
#460
thyol
opened
1 year ago
12
Command for the MSA Transformer in the Variant Prediction example results in a runtime error
#458
aybarsnazlica
opened
1 year ago
2
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