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Hi,
I tried to run the nextflow but it seems to get stuck.
What I did:
```bash
git clone https://github.com/BioImageTools/ome-zarr-image-analysis-nextflow.git
cd ome-zarr-image-analysis-nex…
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Hey, I saw your work on making a basic nextflow treesitter parser and I was trying to set it up in Neovim. I added the parser to treesitter and got it installed but I don't get any highlighting. I'm c…
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Shelly Wanamaker
Yesterday at 1:31 PM
@kubu4 do we have access to `ckpt`? i think my scripts are trying to use those available resources before using srlab resources, but I don't think it is actu…
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- Main Dashboard Brainstorming
- Pipeline group status (# of Running, # of Failed, # of Completed - Chart)
- Latest pipeline status
- Number of pipelines
- Spec (?), notification f…
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```
./nextflow run nf-core/fetchngs -plugins nf-quilt -profile test,docker --input ../nf-quilt/wf/ids.csv --outdir s3://quilt-ernest-staging/nf-quilt/fetchngs
cat ../nf-quilt/wf/ids.csv
SRR99841…
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### Description of the bug
Idk why, If I try to delete the two tools which report error, it will report for another problem
-- Check script '/root/.nextflow/assets/nf-core/sarek/main.nf' at line: 34…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
wf-flu v1.2.3-g5290f79
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No resp…
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Hi,
I am running a nextflow pipeline and rMATS is part of the pipeline. All the steps run well except the rMATS step. How should I overcome this errror? See the attached log below for reference.
[…
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### Description of the bug
Hello,
I'm running into a very weird issue with Nextflow + Tower + SpatialVi when publishing the `sdata_processed.zarr` to S3.
I tested with Nextflow 24.04.3 and 24.04.4.…
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HelloI
I tried to rerun the program under MacOS (Sequoia 15.0).
Environment:
java 21.0.4 2024-07-16 LTS
nextflow 24.10.0
Docker version 27.3.1, build ce12230
On the test data, it stops pr…