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When changing between two datasets via the sidebar dropdown UI, each with a tip frequencies sidecar, we saw someone get a warning banner indicating a failure to normalise frequencies and the sidebar o…
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## Potential tasks
- [x] https://github.com/nextstrain/nextstrain.org/pull/949
- [ ] https://github.com/nextstrain/nextstrain.org/issues/870
- [x] #953
## Ideas considered but not pursued
…
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This text:
> This work is made possible by the open sharing of genetic data by research groups from all over the world. We gratefully acknowledge their contributions.
is added to any dataset on …
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Follow up to https://github.com/nextstrain/ncov-ingest/pull/451.
We are using the Snakemake `--stats` flag to get workflow stats for [GISAID](https://github.com/nextstrain/ncov-ingest/blob/f5f238b…
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## Context
Our automated workflows use short lived AWS credentials for sessions which are limited by the [max_session_duration](https://github.com/nextstrain/infra/blob/814a7e4cd635b40c12fb0c4e83b168…
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I've just run into [this error](https://github.com/nextstrain/augur/actions/runs/10530367718/job/29180176987#step:6:731) on an Augur PR which did not change any docs links:
```
(api/developer/augu…
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We achieve #3 using git submodules; see https://github.com/nextstrain/docs.nextstrain.org/tree/migrate#submodules
However, this solution is not ideal; see https://bedfordlab.slack.com/archives/C7SD…
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When clicking the `Edit on Github` button at the top right on the beast guide page: https://docs.nextstrain.org/en/latest/guides/bioinformatics/import-beast.html, one ends up with a 404 Github error: …
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There are existing resources that we can point to as starting point:
- [Alli's Epi Handbook](https://alliblk.github.io/genepi-book/)
- [Nextstrain VEME tutorial](https://github.com/blab/veme-2022) …
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Hello Richard,
Since there is no relaxed clock argument in "rule refine" in Augur, I have tried to separately run Treetime with --relax argument then put the results back to the pipeline as they're…