nextstrain docs.nextstrain.org issues

nextstrain / docs.nextstrain.org

Umbrella documentation project for Nextstrain

https://docs.nextstrain.org

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issues

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governance: Add entry for SAB

#206 victorlin opened 4 days ago
0
Automate RTD build process in GH CI

#205 genehack opened 2 weeks ago
0
Document manual RTD process in README

#204 genehack opened 2 weeks ago
0
Improve experience between umbrella docs project and subprojects

#203 victorlin opened 2 weeks ago
1
Update ambient install docs to specify Python version

#202 genehack closed 2 weeks ago
1
Update install docs to indicate supported/required Python version

#201 genehack closed 2 weeks ago
1
Stop fetching docs from subprojects

#200 victorlin opened 3 weeks ago
0
Update governance page

#199 victorlin closed 2 weeks ago
1
Move filtering/subsampling docs into this project

#198 victorlin closed 2 weeks ago
2
Fill in missing code-block language

#197 joverlee521 closed 4 weeks ago
0
Resource listing UI docs

#196 jameshadfield closed 1 month ago
1
Add ingest tutorials

#195 joverlee521 closed 1 month ago
2
livehtml: Update --ignore pattern to use `**`

#194 joverlee521 closed 1 month ago
1
make livehtml: infinite loop with sphinx-autobuild-2024.2.4

#193 joverlee521 closed 1 month ago
1
Add guide on filtering and subsampling

#192 victorlin closed 2 months ago
0
Update glossary and graphviz for repo/workflows

#191 joverlee521 closed 1 month ago
3
Update glossary terms `workflow` and `workflow repository`,

#190 joverlee521 closed 1 month ago
1
Docs for different methods to annotate AA muts

#189 joverlee521 opened 3 months ago
2
Documentation for creating a pathogen repo

#188 joverlee521 opened 3 months ago
3
Add docs for "tiered" subsampling

#187 joverlee521 closed 2 months ago
1
install: Rosetta will not be required for Nextstrain CLI itself as of 8.2.0

#186 tsibley closed 3 months ago
0
Add instructions for singularity runtime

#185 victorlin closed 3 weeks ago
0
Update metadata section in Augur to Auspice

#184 joverlee521 opened 3 months ago
2
ambient-setup: Add csvtk, seqkit, and tsv-utils

#183 joverlee521 closed 3 months ago
0
Update versions / snapshots docs

#182 jameshadfield closed 1 month ago
0
Docs updates for Nextclade v3

#180 joverlee521 closed 3 months ago
0
Add tutorials for ingest pipelines

#179 joverlee521 closed 1 month ago
6
Versioned resources copyedits

#178 tsibley closed 4 months ago
5
Versioned resources docs

#177 jameshadfield closed 4 months ago
1
Add documentation on how to add vaccine strain annotations as X's on a Nextstrain tree

#176 j23414 opened 5 months ago
1
Rename environment.yml → conda.yml

#175 victorlin closed 5 months ago
0
Remove Mamba recommendation

#174 victorlin closed 5 months ago
0
Add log recommendations to Snakemake style guide

#173 huddlej closed 6 months ago
0
doc: transition from ncbi virus to ncbi datasets

#172 j23414 closed 7 months ago
0
Specify Read the Docs build OS

#171 victorlin closed 8 months ago
0
Snakemake style guide: Add another way of accessing config values

#170 victorlin closed 7 months ago
1
faq: Add a "What's a runtime?" entry summing them up and pointing to the new runtimes documentation

#168 tsibley closed 9 months ago
0
Update entropy panel documentation

#169 jameshadfield opened 9 months ago
0
install: Recommend WSL more explicitly among Windows options

#167 victorlin closed 9 months ago
1
fetch-via-urls: note colons (:) are not allowed

#166 joverlee521 closed 9 months ago
0
Add section on using lambda for params

#165 victorlin closed 9 months ago
0
Migrate blab/styleguide to the Snakemake style guide

#164 victorlin closed 8 months ago
1
Add section on using the config var

#163 victorlin closed 9 months ago
0
Add Snakemake style guide

#162 victorlin closed 9 months ago
0
Make section headings more navigable

#161 victorlin opened 10 months ago
0
groups/migrate-from-s3: Final update now that the migration is complete

#160 tsibley closed 11 months ago
0
Update runtime-dependent setup step

#159 victorlin closed 11 months ago
0
Detail how we handle missing sequence data, gaps etc

#158 jameshadfield closed 11 months ago
0
Update install docs

#157 victorlin closed 1 year ago
0
groups/customize: Overhaul page to add web interface option

#156 joverlee521 closed 1 year ago
1