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## Background
Raw forms of MSI data in imzML are perfectly appropriate and should be served. But preprocessed forms can also be useful. There may be a large knowledge gap for someone coming from, let…
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[idr0036-gustafsdottir-cellpainting](https://github.com/IDR/idr-metadata/tree/e63515be2e0d201ead634d4b915b68c1f7d2c7d0/idr0036-gustafsdottir-cellpainting)
Sample plate conversion failed with:
```
…
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idr0090-ashdown-malaria
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Hello to the SOPA creators.
I am quite a beginner to Python and the Command Line Interface. I have attempted to run the Ready made Snakemake pipeline for Xenium data (with the Baysor cell segmentat…
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These questions were written on BEP014 before our conference call on 09/28/2018. Some of them were addressed in that call, and some may still be open. This ticket is here just to keep track of that co…
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The issue is decribed here:
https://forum.image.sc/t/ngff-converter-1-1-4-fails-to-convert-czi-file-which-open-normally-in-fiji/78408?u=sebi06
***
Hi all,
I just tried to convert a CZI fil…
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TASKLIST:
- ABC #132
- OME-Zarr
- OME-TIFF
- ...
> > At this point I don't think a universal entry point for all the formats is strictly necessary.
>
> I think that …
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*This issue captures the requirements as well as the possible implementation choices for a first integration of OME metadata into the OME-NGFF container. The UoD team is targeting the specification as…
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see: https://pypi.org/project/bfio/
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https://github.com/IDR/idr0016-wawer-bioactivecompoundprofiling
Sample plate conversion failed with:
```
(base) [dlindner@pilot-zarr2-dev idr0016]$ time /home/dlindner/bioformats2raw/bin/bioforma…