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...I am trying to build an industrial-production-specific SPIRES. I found the upper level production ontology built by Industrial Foundry Ontology. Do you have any suggestions how to inverse-engineeri…
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From @matentzn at today's Monarch Huddle:
> Wishlist to OntoGPT team: we need a scalable solution to suggestion EQs for phenotype ontologies.
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We can generate prompts from schemas, as in OntoGPT or #1499, we can generate schemas themselves, and we can populate schema entries given context _a la_ CurateGPT.
Can we also generate schema-comp…
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- https://github.com/turbomam/gen-pop-linkml2sheets
- _Added:_ `{{cookiecutter.project_name}}/src/{{cookiecutter.__project_slug}}/datamodel/generate_and_populate_template.py`
- _why does generat…
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Hey I wrote a small [lib](https://openai-function-call.onrender.com/) around using function calls and pydatnic for extraction and i think some ideas could be appleid via the CLI or API
I really like …
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Several releases (like https://github.com/monarch-initiative/ontogpt/releases/tag/v0.3.0) have examples in the notes. These examples aren't available elsewhere, so including them in the documentation …
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Cell Guide has draft cell type descriptions from ChatGPT
e.g. Acinar Cell Of Salivary Gland
* On [OLS4](http://purl.obolibrary.org/obo/CL_0002623)
* On [Cell Guide](https://cellxgene.cziscience.co…
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> Hi everyone, thanks for all the effort you're putting in this project! I'm working on the extraction of events and arguments in a different domain, the legal and juridical one. In this domain resour…
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Hi!
I am trying to define my own extraction model using LinkML (more like editing the already existing templates) that I will then use to extract gene associations to ontologies from these 2 source…
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> I'd like to work with the [Plazi](https://plazi.org) taxonomic treatments dataset, which includes many images with associated anatomical descriptions. However, the images typically contain several s…