-
### Description of the bug
I ran the current version of pgsc_calc with 63 scorefiles on a single sample and got this error:
```
FATAL: container creation failed: mount /proc/self/fd/4->/usr/l…
-
It seems like for PGS002759 the formatted scoring file is correct (contain expected data from Mars et al); however the harmonised files contain the harmonised data for PGS000767 from Guffanti et al. I…
-
-
With pgscatalog-utils==1.4.1, I'm getting a new error running `pgscatalog-combine` with ~20 PGSCatalog scores. One example of a score that's newly causing an error is PGS003581.
Output from new ver…
-
## Describe the Bug
Upgrading to module v8.1.0 renders puppetdb unoperational , service doesn't start
The following log entries are observed in puppetdb.log
```
2024-06-01T14:24:13.865Z INFO [p.…
-
### Description of the bug
Hello, first of all, congratulations on creating such a comprehensive tool like pgsc_calc. I have been trying to set up the analysis and encountered an issue that I don't u…
-
Hi! Thanks for using the PGS Catalog calculator (`pgsc_calc`).
If you need help with setting up the calculator, configuration options, or have questions about polygenic risk scores generally, the …
-
### Description of the bug
pgsc_calc is repeatedly failing due to out-of-memory errors during the pgscatalog-matchmerge step. The process is being killed when attempting to filter best_match variants…
Fiwx updated
2 months ago
-
### Description of the bug
I'm running the singularity version of the tool on a CentOS 7 Linux cluster. Every time I attempt to run it, whether directly via calling "nextflow run..." or via submittin…
-
### Description of the bug
Hi,
I was testing the code with the PGS000872 dataset using a VCF file with a few variants. I noticed that transversions were not matched by default. To include these SN…