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When running the `lmm` model to detect lineage effects, I sometimes get a `statsmodels` error because the `endog` variable contains `nan` values:
```text
ValueError: endog must be in the unit inte…
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`make_sample_lr_prod_activity_plots_Omnipath` plot is very big. Also, I have three phenotypes for each sample, two conditions per phenotype. Age: Old, Young, Diesase Recurrence: No, Yes. Smoker: No, Y…
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Dear Prof. Zhang:
I met errors when performed GWAS using IIIVmrMLM as shown below:
`[1] "Single-environment analysis for Pheno1 begins"`
`[1] "Kinship matrix caculating"`
`Error in t(uu) %*% …
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Use case: A breeder wants to allow a technician to upload a daily inventory of flowering parents in a crossing block trials.
This could be accomplished with minimal change to operating procedures …
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#685
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Not sure if some of these are population phenotypes, since they represent the percentage of cells with a given cellular phenotype. Full list below, but some examples:
* Penetrance of cells that hav…
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Hello, I am trying to replicate your simulation described in the manuscript.
I generated single cell data using Splatter with the following parameters:
parameters
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For example, amazonid and south_american are practically undistinguishable
```
--- amazonid.json 2020-08-08 01:56:10.665254935 +0300
+++ south_american.json 2020-05-28 22:04:40.854955048 +0…
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After setting up an initial version of the phenotype search results page, I noticed that some phenotypes are missing in the new database.
**Examples:**
`aberrant F-actin organization`
- [old pa…
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**Submitting author:** @petrableeker (Petra Bleeker)
**Repository:** https://github.com/BleekerLab/PhenoFeatureFinder
**Branch with paper.md** (empty if default branch):
**Version:** v0.1.3
**Editor:…