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saeyslab
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multinichenetr
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
GNU General Public License v3.0
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Condition-specific cell types error at get_DE_info()
#79
chloebazin
opened
2 days ago
0
multi_nichenet_analysis Requires Writing All Combinations of Contrasts
#78
DarioS
closed
6 days ago
2
Installation issue
#77
sidrahmaryam-cyber
closed
1 week ago
4
Older version
#76
shelby2919
closed
1 week ago
1
Cell types abundances in prioritisation score
#75
EspressoKris
closed
1 week ago
1
combine_sender_receiver_de Duplicate Function Causes Error
#74
DarioS
opened
4 weeks ago
0
Potential namespace conflict with the `summarise` function
#73
Huangy57
opened
1 month ago
0
Error in Interpretable bubble plots
#72
Chenium123
closed
1 month ago
8
Issue with group_prioritization_table being empty
#71
NeuralBind
closed
1 month ago
2
'combine_sender_receiver_de' function exists in nichenetr and multinichenetr
#70
avpatel18
closed
1 month ago
3
installation issue
#69
alexstu
closed
2 months ago
2
Running multinichenet for a single sampleID but 3 groupID
#68
ceciih
closed
2 months ago
1
Prioritization Weights Seem Arbitrary
#67
DarioS
closed
2 months ago
1
min_cells Contradictory Default
#66
DarioS
closed
2 months ago
1
get_abundance_expression_info Slot Extraction is Unclear
#65
DarioS
closed
2 months ago
3
Question senders_oi/receivers_oi and p_adj values
#64
chloebazin
closed
2 months ago
1
Random effects covariates
#63
tomthomas3000
closed
2 months ago
1
Question
#62
nicolebussola
closed
3 months ago
1
Error in `dplyr::inner_join()` when running `multi_nichenet_analysis()`
#61
cgoneill
closed
3 months ago
4
incorporating ATAC-seq data?
#60
wanghlv
closed
3 months ago
2
Interpretation on Ligand Activity in Receptor Value
#59
VivianQM
closed
3 months ago
1
Change font size in make_ligand_activity_target_plot()
#58
AlexCHoppe
closed
3 months ago
1
How to set "contrast_tbl" to reproduce Fig 3a
#57
haotian-zhuang
closed
5 months ago
2
Intercellular regulatory network systems view-graph_plot errored
#56
Chenium123
closed
4 months ago
1
perform_muscat_de_analysis errored
#55
vanessadisela
closed
3 months ago
3
Error in muscat::pbDS
#54
emmmasu
closed
3 months ago
5
Plotting the Ligand-Activity plot for a ligand of interest
#53
pdimitron
closed
2 months ago
3
How do you determine which group the results are up-regulated in? why the circolplot incoherence with heatmap?
#52
SMU-TK-2022
closed
6 months ago
1
Can't install multinichenetr on apple silicon macOS
#51
kaarg2
closed
6 months ago
2
How can I save the high resolution plots generated from multinichenetr with R code?
#50
kaarg2
closed
6 months ago
1
Sample Prioritizations are there, but not getting group prioritizations
#49
pdimitron
closed
6 months ago
2
How to visualize between sample differences in a group?
#48
dhairya02
closed
6 months ago
1
Error when creating contrasts_oi_simplified when running multi_nichenet_analysis_combined
#47
Isabellvse
closed
6 months ago
1
circos plot
#46
inbarsh2
closed
6 months ago
1
Issue with abundance_expression_info, Error in `dplyr::pull()`: Caused by error: ! object 'ligand' not found
#45
15013040212
closed
7 months ago
1
supporting evidence for the regulate potential of a ligand on a target
#44
zhenzhenyang-psu
closed
7 months ago
2
inner_join Issue in "Intercellular regulatory network systems view"
#43
Mialn20
closed
6 months ago
3
Regarding Ligand-receptor DB
#42
lagom2728
closed
7 months ago
1
no sample_id
#41
GGboy-Zzz
closed
8 months ago
4
inner_join issue
#40
ckim-nkx
closed
6 months ago
2
Error in dplyr::mutate() during "Combine all the information in prioritization tables"
#39
nvribeiro
closed
6 months ago
13
Use on multiple samples but no different conditions
#38
nvribeiro
closed
8 months ago
1
How to use bulk RNASeq data?
#37
akiss-me
closed
8 months ago
1
Dissecting direct vs indirect effects of simulation
#36
Git535323
closed
9 months ago
1
Interpretation of scaled ligand activity values
#35
carolinemorrell
closed
9 months ago
1
Fig 2b in preprint
#34
liaojinyue
closed
9 months ago
1
Interpreting raw and scaled ligand activity values
#33
noranekonobokkusu
closed
9 months ago
2
Condition-specific cell types - Can you run multinichenetr on datasets that have varying cell type composition?
#32
olympiahardy
closed
2 months ago
7
How to proceed when a cell type does not have enough number of cells in a group
#31
anemartinezlarrinaga2898
closed
9 months ago
1
How to manually adjust legend in make_sample_lr_prod_activity_plots()?
#30
VivianQM
opened
10 months ago
1
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