-
Given a sequence with 5' adapter, eg **ALONGADAPTOR**sequence, if sequence is low quality in the end, or has polyG, cutadapt will trim this sequence into **ALONGADAPTOR**seq (*1st case*) or **ALONGAD…
-
Website/Branding:
- [x] polygeist.mit.edu @wsmoses [almost done, pending https and some fastcgi fixes].
- [ ] Include relevant content [initially forked enzyme.mit.edu]
- [ ] Logo!
- [x] Rename re…
-
Hi,
I seem to have the same problem as described in the closed issue #244 using --nextseq-trim on paired-end data. Poly-G tails in reverse reads were not removed although I specified the --nextseq-t…
-
Andre, can you please summarize our email thread here regarding possible change to trimmer in the dnase pipeline?
Include the alternative packages, the criteria I outlined, and your answers to thos…
-
Hello,
Thank you for adding the usage examples. I am trying to run your em-seq.nf script and it halts on mapping due to a file missing. The command:
nextflow run ../em-seq.nf --fastq_glob "*{1,2…
-
Hi,
Suppose I have a Peptide `IQGLSFDIYEALL `which I want to dock (create a heterocomplex?)
to a protein `QEEACAKNFGAFCVFVGIVRKEDN`
Is this syntax correct to run with [AlphaFold2_advanced](htt…
-
With the duplication resolved #13 we can now move forward to trimming the raw data accordingly.
### fastp
Fastp is readily updated and has good documentation and not to mention the most efficient …
-
After running the following `fastp` command on my paired-end metagenomics data:
```
fastp -i $f -I ${f/_1./_2.} \
-o ./fastp_filtered/${bn} -O ./fastp_filtered/${bn/_1./_2.} \
--detect_ad…
-
Hi,
I'am using Nuxt.js with your plugin. All is working nice, but when i try to do npm run build i got this error:
Unexpected token: punc (() [./node_modules/vue2-google-maps/src/components/polygo…
-
Hi,
I tried to run the pipeline for using the sample examples in AWS account and HPC cluster (activate the conda environment). But, I get the following error.
````
(nextflow) [ml@chimerahead EM-se…