OpenGene fastp issues - Githubissues

OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

MIT License

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issues

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Implement vectorisation to make this lib blazingly fast

#585 chinwobble opened 2 days ago
4
fix incremental build

#584 chinwobble closed 1 day ago
0
Adapter Detection Issue with Paired-End Data in fastp Leading to Incomplete Trimming

#583 Liping-L opened 3 weeks ago
0
merging read pair mates using a reference sequence

#582 mmokrejs opened 4 weeks ago
0
merge paired-end reads: include average or even better median overlap length

#581 mmokrejs opened 4 weeks ago
0
Deduplication issue: failure of one round deduplication + accuracy level issue. [fastp v0.23.4]

#580 nightkid03 opened 1 month ago
0
Disable "too many N" filter

#579 matthdsm closed 1 month ago
0
Different minimum lengths for the forward and reverse reads during filtering

#578 MariamFahmy closed 2 months ago
0
Adapter sequences not removed from short SE data

#577 MafGal opened 2 months ago
0
Fastp does not remove G homopolymers

#576 Homap opened 2 months ago
0
Output read lengths are affected by duplicate --adapter_sequence arguments

#575 mwhamgenomics opened 2 months ago
0
What are the default settings?

#574 jiangzy26 opened 2 months ago
0
Ability to use FASTA files as input

#573 vkkodali opened 3 months ago
0
trimming adapters at the beginning of the read and IUPAC nucleotide codes

#572 hrehrauer opened 4 months ago
0
Use with fifo?

#571 GregTD42 opened 4 months ago
3
How can I reproduce the results of trimmomatic in fastp?

#570 jeong2624 opened 4 months ago
2
Feature request: output file listing the IDs of duplicate reads and associated "representative reads"

#569 charlesfoster opened 4 months ago
1
How can I generate images of the same size as the insert fragment individually

#568 Missthepast opened 5 months ago
0
typo in "forogt" -> "forgot"

#567 SchwarzMarek closed 4 months ago
1
Feature request: remove reads with poly_X tails and polyX in general

#566 roni-fultheim opened 5 months ago
0
ERROR: '+' expected

#565 spw6422 opened 5 months ago
5
Feature Request: fastp operation on input and output directories

#564 SuhasSrinivasan opened 6 months ago
0
Running fastp in quiet mode.

#563 otradnaya opened 6 months ago
2
Not reproducible

#562 jnmaloof opened 6 months ago
7
not support arm?

#561 YWYONE opened 6 months ago
1
Error is raised for problematic rows

#560 TomerAntman opened 6 months ago
3
few options throw 'undefined error' -reg

#559 parima678 opened 7 months ago
0
fastp not removing all Illumina universal adapter sequences as indicated by FastQC

#558 luckyvivi opened 7 months ago
5
No adapter detected for read and Q20 bases: 4747174600(99.9999%)

#557 h20gg702 opened 7 months ago
0
Highlight the new publication

#556 YongxinLiu closed 7 months ago
0
Nanopore data filtering using fastp

#555 emilydolivo97 opened 8 months ago
1
Keep occurred error message from the beginning < igzip: invalid gzip header found >

#554 teddy-han opened 8 months ago
0
Not able to install on Mac book M1

#553 ranijames opened 8 months ago
4
interleaved output is not reproducible with multiple threads

#552 briankegerreis opened 8 months ago
2
Split interleaved output

#551 Poshi opened 8 months ago
0
Added a new function(umi_skipb) to the program to skip the specified bp number before trim the UMI sequence.

#550 biolxy opened 8 months ago
0
Store duplicate reads

#549 johnw2358 opened 8 months ago
0
Interpretation help file?

#548 jullee opened 9 months ago
0
Missing most reads after given r2 adapter

#547 Flying-Doggy opened 9 months ago
1
minor typo fix

#546 Gaura opened 9 months ago
1
cuting doesn't interfere with deduplication

#545 SilasK opened 9 months ago
0
Fix typo

#544 fplazaonate opened 9 months ago
1
Feature request: add option to set lower limit of unqualified quality

#543 ybendana opened 10 months ago
0
Can fastq remove read sequences with duplicate IDs?

#542 ghost opened 10 months ago
0
No mouse ouver in kmer matrix

#541 SilasK opened 10 months ago
0
Very short fragments

#540 SilasK opened 10 months ago
0
Can fastp draw PNG format?

#539 ghost opened 10 months ago
0
aborted core dumped

#538 ramnageena11 opened 10 months ago
0
fastp in my pip package

#537 theAguy opened 10 months ago
0
Insert size estimation and report interpretation

#536 lmartinezgili opened 11 months ago
2