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1.
Does every protein that is a target of a protein modifying enzyme
https://www.pombase.org/term/GO:0140096 (catalytic activity acting on a protein)
have the reciprocal modified-by protein-blah…
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[log_2024-09-16_18-54-51.txt](https://github.com/user-attachments/files/17020939/log_2024-09-16_18-54-51.txt)
Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab…
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## Context
MSstats output generally contains uniprot IDs or uniprot mnemonic IDs, but not HGNC IDs. In order to query INDRA properly, HGNC IDs are ideal. Fortunately, there are INDRA python client l…
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* **PTHR ID & PTN node:**
GO:0003961 | O-acetylhomoserine aminocarboxypropyltransferase activity | IBA with PTN002887184 , S000004294 , CAL0000188058 , met17
* **Sequences with problematic a…
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The September 2024 GO Release ([2024-09-08/](http://release.geneontology.org/2024-09-08/index.html)) is now available.
http://current.geneontology.org/
http://release.geneontology.org/2024-09-08
…
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**Is your feature request related to an existing issue or bug?**
Similar to #295, using hmm instead of a protein set.
An option like: "--hmms: Trusted HMM to first annotate from (default '')" from…
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Hello,
I am currently working on the genome annotation of a myxozoan species and would like to use BRAKER for this purpose. Based on a BRAKER tutorial, I understand that the optimal approach for my s…
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* **ARBA rule (ID and label):**
ARBA00028584
* **Sequences with problematic annotation (ID + gene/protein name):**
https://www.pombase.org/gene/SPAC1296.04
* **Description of issue**
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Hi everybody,
I am doing a functional metagenomic study. I did the annotation of protein sequences using HMMER against the Resfam database.
I mean I have a list of predicted resistance genes from …