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Hello! Great tool you have developed.
I was curious as to the specific preprocessing steps for the proteomic data. For instance, CPTAC LUAD seems to contain 11485 proteins, where the original was …
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Dear Bioconductor team,
- Repository: https://github.com/RFLOMICS/RFLOMICS
Confirm the following by editing each check box to '[x]'
- [x] I understand that by submitting my package to _Biocon…
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Most enrichment analysis tools are designed at the gene level and only support gene IDs.
The first step to performing GO analysis for proteomics data is to convert protein IDs to gene IDs and then…
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It'd be nice to get _ALL_ data of a particular data type (transcriptomics, proteomics, etc.) regardless of source. Can you add a function to do this? We can also filter by source after the fact.
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Hi Fengchao,
I am working on proteomics data using FragPipe (with IonQuant) and processing a dataset of 1392 mzML files. The analysis proceeds smoothly until IonQuant runs into an out-of-memory err…
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I recently began using the Linux platform for work. I considered using our server, which is running Ubuntu 22.04.4 LTS, to run DIA-NN.
_I installed .deb version._ I converted .wiff to .mzml and kept …
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I ran an MS-GF+(v2017.01.13) search using SearchGUI, and received the following errors when the output files were being generated:
Writing results...
java.lang.NullPointerException
at edu.ucsd.m…
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Hello,
We're randomly receiving the following error in our HPC environment when Regenie is executed by our researchers:
Script output:
/var/spool/slurmd/job484610/slurm_script: line 25: 21475 S…
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PLEASE If there is a way to correlate transcriptomics and proteomics data this would be extremely fascinating! Thank you!