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We need enzyme data for the BMCA workflow. `EFlux2` implements rules to deal with multiple genes dictating a reaction.
Take the upper bounds assigned by `EFlux2` and create a dataset using these up…
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We need to use DIA-NN to process our lactylation proteomics data, however we didn't find anywhere to input these parameter(lactylation modification or 72.021 Da Delta mass). So our project have to bee…
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Hello,
I am trying to use xCell with Proteomics data, before using it I normalized and imputed the data. I also checked the number of genes, the tool requires minimum 5000 genes, my file contains …
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Hi! Thanks for making this nice tool available!
I'm trying to use CausalPath for RNAseq data using these parameters:
proteomics-values-file = xxx.txt
id-column = ID
symbols-column = Symbols
sit…
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## Aim of the project
This project aims to have full single-cell transcriptomics and tissue proteome expression profiles across different species. These are the possible biological questions:
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_I'm using gui V1 on windows 11. Used paste MS runs from clipboard._ to submit the raw file.
> Error coming:
Converting raw files to mza format...
Processing file: D:\GBC_2023\mzML\GBC_S2.mzML
P…
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Hi I installed the package inside my miniconda and I am working in the (ms proteomics) environment within the cd of my report.tsv from DIA-NN.
However
(msproteomics) (msproteomics) PS D:\Data\Dom…
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Hi.
I have data from a spatial proteomics experiment in the format shown below, which just contains x-y co-ordinates, intensity and mz values.
I would like to read this into an SPE object. How cou…
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### Contact Details
_No response_
### Description
As discussed with the SMOC team, MODOs should be extended to include metabolomics and proteomics data.
Patrick Pedrioli and Nicola Zamboni have …