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Hello hello, while writing our own HOD code with @bhorowitz and others we were trying to compare our results to halotools as God's truth, but were finding some residual differences in the 2pt function…
EiffL updated
3 years ago
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1. For the radial distribution function figures, I think you are plotting them right, but the title of g_22 might be wrongly written as g_11.
2. The last figure (time to reach MSD=1 vs. 1/T) may have…
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hi
Thanks Zheng, for writing such a nice script.
since there is no "manual", its hard for me to understand how to execute the script?
I have just copied and execute your script, it gave a plot, …
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## Use Case
This functionality will be useful to recreate observed radial distributions of punctate structures such as peroxisomes and endosomes.
![avg_PILR_squeezed](https://github.com/mesoscope/…
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Great job! There's one small issue about the radial distribution function. As the system is restricted in a box with finite atoms, the atom cannot find enough neighbors once the distance is beyond box…
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Hi,
Would it be possible to write a short tutorial about how to use the pair_correlation_2d function? In my specific case I'd like to find the radial distribution function between particles in two di…
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This arose from a discussion @AnneCarpenter and I had earlier today due to the following facts
- MOID's current order of option presentation is not ideal
- It's unclear from a naive user point of vie…
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In GitLab by @mkovari on Oct 5, 2021, 14:03
It would be very nice to have the radial profile of radiation emission. PROCESS already calculates the radiation emission at each radius and then integrat…
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Check for mdtraj, vmd, cpptraj and MDAnalysis where distance searches are used and classify for benchmarks
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Need to replicate Phantom's `setup_disc.F90` which allows the user to choose:
- what disc or discs to setup,
- round one or more stars, either as sink particles or an external potential,
- wheth…