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**Coach assistant:** @underground-11
**Sanity checks:**
* [x] GitHub profile photo + detailed profile description
* [x] Initialize proposal
* [x] Writing proposal
* [ ] Ask review to mentor
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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I am trying to create a sample of single-base positions to test distribution of features for my dataset of SNPs. Also, this sample should be only within the coordinates of interest, i.e. some ~300 5-5…
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Hello. I have histone data in addition to ATACseq, and I was interested in running the footprinting analysis on the histone data as well as on the classical ATACseq. Unfortunately it doesn't seem to b…
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[Yidi Sun](http://www.cebsit.cas.cn/yjz/qnyjy/syd/yjfx_156298/), Bioinformatics, CAS
[Su-In Lee, U of Washington](https://suinlee.cs.washington.edu/su-in-lee/title-abstract-bio)
[Scott Lundberg, MSR…
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This issue contains monthly updates to an automatically ranked list of PubMed papers as candidates for curation in the Bioregistry. Papers may be relevant in at least three ways:
(1) as a new prefix…
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I am developing and maintaining a software suite called Regulatory Sequence Analysis Tools (RSAT, http://rsat.eu/), which includes several dozens of tools, and is available via 6 taxon-specific Web se…
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https://doi.org/10.1101/099879
> Massively parallel reporter assays (MPRAs) are a method to probe the effects of short sequences on transcriptional regulation activity. In a MPRA, short sequences a…
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Hi,
I have been able to succesfully run the RGT-Hint pipeline according to the tutorial on the website (https://www.regulatory-genomics.org/hint/tutorial/) to conduct footprinting and differential …
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## 🐛 Bug
When `torch.exp` is present in the model in any form, including softmax, logsoftmax, and logsumexp operations, the deltas seem to get pretty big for my model. I've checked to make sure the…