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CostaLab
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reg-gen
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
https://reg-gen.readthedocs.io/
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IndexError: index is out of bounds
#272
sathvik-samaga
closed
1 month ago
0
warnings/errors in rgt-THOR
#271
sunta3iouxos
opened
1 month ago
0
rgt-THOR multiple warnings for wigToBigWig
#270
sunta3iouxos
opened
1 month ago
0
failed installation on Mac mini with Apple M2 Chip
#269
JianxunHan
opened
3 months ago
1
Deprecation warnings, non-compatibility with python 3.12, libpng12.so.0
#268
StrohD
opened
4 months ago
0
Error in rgt-hint differential for my own data
#267
junichitaniguchi
opened
4 months ago
0
Extension sizes estimated with THOR
#266
dmitrymyl
closed
1 month ago
1
Fold-change values in THOR differential peaks and post-processed bigwigs
#265
dmitrymyl
opened
5 months ago
0
Result file description
#264
ilead-cong
opened
7 months ago
0
Update README.md
#263
computerscienceiscool
closed
8 months ago
0
aarch64 support
#262
EricDeveaud
opened
9 months ago
0
Transcription factor scatter plot
#261
gf5634
opened
10 months ago
2
RGT Hint differential error
#260
gf5634
closed
10 months ago
5
ResourceWarning: unclosed file (Enable tracemalloc to get the object allocation traceback)
#259
sunta3iouxos
opened
11 months ago
0
Develop
#258
lzj1769
closed
11 months ago
0
Develop
#257
lzj1769
closed
11 months ago
0
Number of success in mpbs.bed and fulltest_statistics.txt files did not match
#256
hhvu0102
opened
12 months ago
0
#The version of JASPAR
#255
Mariokey
closed
11 months ago
1
Motif enrichment scores
#254
amwa
opened
1 year ago
1
Issue running on Macbook Pro M1
#253
rm1238
closed
11 months ago
18
Question regarding how Lineplots values are calculated, related to #116
#252
AlexBlais74
opened
1 year ago
1
RGT installation successful, but rgtdata folder is missing.
#251
mdu4003
closed
1 year ago
5
invalid load key, '\x00'
#250
shenweiyan
closed
1 year ago
0
OverflowError: cannot convert float infinity to integer
#249
li1311139481
closed
1 year ago
3
TDF issue
#248
iorilondon
opened
1 year ago
2
rgt-hint throwing an error (without any other input) post-installation (Linux)
#247
sufyazi
closed
1 year ago
10
RGT_Differential_Error
#246
rm1238
opened
1 year ago
5
Questions about motif matching
#245
hhvu0102
opened
1 year ago
0
Generating mtf file
#244
czfoo
opened
1 year ago
0
KeyError: 'GL456233.2'
#243
czfoo
closed
1 year ago
2
Modify volcano plot for small fold changes
#242
minashaigan
closed
1 year ago
0
Merge pull request #240 from CostaLab/master
#241
lzj1769
closed
1 year ago
0
Bump setuptools from 57.5.0 to 65.5.1
#240
lzj1769
closed
1 year ago
0
rgt-THOR IndexError: list index out of range
#239
SophieEhres
opened
1 year ago
0
RGT-HINT:How to input more than one replicate during one group
#238
wvdon
closed
1 year ago
1
Bump setuptools from 57.5.0 to 65.5.1 in /docs
#237
dependabot[bot]
closed
1 year ago
1
Lineplot for specific transcription factor
#236
konsta-kukkonen
closed
1 year ago
1
Develop
#235
lzj1769
closed
1 year ago
0
THOR "IndexError: cannot do a non-empty take from an empty axes" issue
#234
juylmin
opened
1 year ago
0
rgt shifting
#233
Andi964
closed
1 year ago
1
RGT-HINT genome files are incompatible with nf-core ATAC-seq pipeline.
#232
hyjforesight
opened
1 year ago
1
RGT-HINT Wrong Species TF Hits
#230
gulumy
closed
1 year ago
2
Error of running rgt-viz on Apple M1 chip
#229
lzj1769
closed
1 year ago
1
Remove redundant code line
#228
minashaigan
closed
1 year ago
0
Develop
#227
lzj1769
closed
1 year ago
0
Release/1.0.0
#226
lzj1769
closed
1 year ago
0
fix viz for lineplot
#225
chaochungkuo
closed
1 year ago
2
RGT-Viz tutorial currently does not work
#224
lzj1769
closed
1 year ago
1
Redirect data links to ftp server
#223
minashaigan
closed
1 year ago
0
Edit volcano plot function
#222
minashaigan
closed
1 year ago
0
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