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### Steps To Reproduce
Running on [SageMathCell](https://sagecell.sagemath.org/?z=eJzz1rOpslOwVfArzU1KLXLLTM1J0aiIM1HQVTC00KqIM1LQVrDU5OXy9waq8dYrysxLj89Pi8_MK0lNTy0q1gBKBQBl_L31MlNSE3M0jIECicXFqUU…
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# The problem
The function `snf_with_transform` returns inconsistent results, at least over residue rings of `ZZ`. As documented, the returned tuple `S,T,U = snf_with_transform(A)` should satisfy `…
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Hi, I was preparing it as my traindataset. I want to report several problems I met.
1. exact residue ids of the interface. when i check metadata.parquet file. in the version of 2024-02, i didnt fin…
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- [ ] I have searched the [issues](https://github.com/seata/seata/issues) of this repository and believe that this is not a duplicate.
### Ⅰ. Issue Description
TimeoutRollbacked和Rollbacked在db，…
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## Bug Report
### Current Behaviour:
Amulet does not completely delete chunks and instead leaves residue data that can be seen in mapping apps like Unmined.
### Expected behavior:
De…
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Thank you for sharing TMbed! I noticed there isn’t a training script in the repository, and I had a question regarding the cross-entropy loss function used.
From the paper, it seems like TMbed might …
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Hi @Elcock-Lab
Thanks for such a wonderful paper and novel insights based on AF structures. I have a few queries about the code:
**Query1:** In the paper you said
>To prevent the counting of t…
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I didn't think we have many of these, but this log file
https://curation.pombase.org/dumps/latest_build/logs/log.2024-09-24-21-52-42.chado_checks.modification_on_wrong_residue
now has 2302, main…
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In these cases we could group
like
cdc2-33(A177T aa) affecting cdc18 modified residue T10A,T46A,T60AT104A,T134A
cdc2-33(A177T aa) affecting rap1 modified residue T378,S422,S513
etc
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I see this error when processing pdb files with residue numbers into the thousands, which shifts over column placement starting at the residue number:
Input:
```
ATOM 16105 N GLN D 998 4…