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I have very basic questions.
I already generated loom files using velocyto from cellranger filtered matrix and bam files. Now if I am interested in running SoupX, do I need to rerun velocyto afte…
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There's an example notebook in draw_rna but it should be Co-lab runnable through `pip install` of the library and should sit in main directory.
Also need to consolidate draw_rna repository into sin…
rhiju updated
5 hours ago
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- [ ] New term : normal cenH-derived RNA level
A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA transcribed from cenH measured in a cell is normal…
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- https://github.com/broadinstitute/gtex-pipeline/tree/master/rnaseq
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**Steps to Reproduce**
1. Clear cache, cookies and local storage
2. Switch to the Macro mode
3. Draw such a sequence of nucleosides, but it is important to manually drag each bond from AP R1 to A…
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When I create an RNA_DeNovoProtocolMover() using a Python script, it stops running and throws an error with code ‘139 (interrupted by signal 11:SIGSEGV)’ either during initialization or when applying …
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`/DATA1/Softwares/CTAT-SPLICING.v0.0.3.FULL/CTAT-SPLICING.v0.0.3/STAR_to_cancer_introns.py --SJ_tab_file ./0710-0496_10_R1_RNA/0710-0496_10_R1_RNA_star_SJ.out.tab --chimJ_file ./0710-0496_10_R1_RNA/0…
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【考虑到大多数研究人员更喜欢使用 transformers 和 pytorch 作为后端。因此,我将我的工作转移到 transformers 并从头开始训练 pytorch 模型。新模型使用更强大的设置进行训练:现在最大模型长度高达 2048,预训练数据集是 rnacentral 的最新版本,经过长度过滤(
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Thank you very much for sharing. I found that some data was not sorted during the reproduction process. How do you handle the sorting of these data such as BMMC data how to sort?Can you provide a tuto…
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The dictionary will have this form : (according the resname for DNA and RNA in rna.rtp and dna.rtp files of each force field [mostly AMBER and CHARMM, the other don't have these files] in https://gith…