RosettaCommons PyRosetta.notebooks issues

RosettaCommons / PyRosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

https://rosettacommons.github.io/PyRosetta.notebooks/

MIT License

447 stars 145 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

An error in GALigandDock: ERROR: error! pharmacophore docking requires reference_pool to be as 'INPUT'!

#102 laviaf opened 2 weeks ago
0
Inquiring regarding DNA model tutorial

#101 lxm1117 opened 3 weeks ago
0
class RNA_DeNovoProtocolMover.de_novo_setup_from_command_line() or apply() can't run normally

#100 nadounadou opened 2 months ago
1
Request to add tutorial for building cyclic peptides

#99 astomer2 opened 2 months ago
6
update notebooks/02.01-Pose-Basics

#98 lyskov closed 4 months ago
0
Segmentation fault when importing ESMFold and Tokenizers from transformers along with Pyrosetta

#97 SIAndersson opened 5 months ago
0
Loop Modeling chapters

#96 kathyle9 closed 5 months ago
0
Update 02.01-Pose-Basics.ipynb

#95 NooraAz opened 7 months ago
1
Merge pull request #1 from RosettaCommons/master

#94 Massawe14 closed 8 months ago
2
Why the mutation can not be executed thoroughly?

#93 JonasLi-19 opened 10 months ago
2
How to deal with the error: Too many tries in fill_missing_atoms?

#92 JonasLi-19 closed 10 months ago
1
ERROR/warning when read pdb files

#91 SanFran-Me opened 10 months ago
1
Preparing Protein, cutoff of 1.5 REU, convert the REU to kcal/mol?

#90 ascusf opened 1 year ago
0
How can I convert protein torsional angles back to cartesian coordinates

#89 TianmingQu closed 1 year ago
2
How can I execute this command in pyrosetta?

#88 404-xianjin opened 1 year ago
3
In tutorial Protein Geometry chapter angle is differ

#87 Paulie-ai closed 1 year ago
1
Running PyRosetta on Google Colab

#86 sv2530 opened 1 year ago
2
Unable to access the software, 401 unauthorized

#85 kylevaccaro4 opened 1 year ago
1
ModuleNotFoundError: No module named 'pyrosetta'

#84 skr3178 closed 1 year ago
1
add acetylated N-terminus using pyrosetta

#83 ghost opened 1 year ago
0
Update 04.01-Basic-Folding-Algorithm.ipynb

#82 sophie006liu opened 2 years ago
0
updating install procedure

#81 lyskov closed 2 years ago
0
how to set "-nstruct" ,if I want to output 5 fastrelax model?

#80 ak422 closed 2 years ago
2
IndexError in Notebook 06.07 - Denovo Protein Design

#79 konradpaszkiewicz opened 2 years ago
2
How to customize the scoring function?

#78 HGX-001 opened 2 years ago
0
Docking Protocols

#77 LivC193 closed 2 years ago
1
Update 02.01-Pose-Basics.ipynb

#76 jjgray opened 2 years ago
1
Access data of the movements performed and if they were rejected or no

#75 robertoimuno opened 2 years ago
0
please, give example of using snugdock from pyrosetta

#74 antonkulaga opened 2 years ago
0
Add link to released paper in readme

#73 jadolfbr closed 2 years ago
0
Update Table of Contents, link fix, update student-notebooks

#72 kathyle9 closed 2 years ago
0
Missing sections

#71 avivko opened 2 years ago
0
Carbohydrates: Repairing broken test after function-name change

#70 JWLabonte closed 2 years ago
0
Remove Second Declaration of FastRelax

#69 benf549 opened 2 years ago
0
New instructions

#68 kathyle9 closed 3 years ago
2
I loaded the Python interpreter that deployed Pyrosetta Anaconda environment using PyCharm, but found many unresolved references while programming.

#67 HGX-001 closed 2 years ago
1
Fix RabD issue with block.

#66 jadolfbr closed 3 years ago
0
Fix rabd notebook with recent changes to master.

#65 jadolfbr closed 3 years ago
0
Updating references to python3.6 to 3.7 following colab's update

#64 aleaverfay closed 3 years ago
1
Is there a way to solve the python version conflict between PyRosetta (Python 3.6) and Colab (Python 3.7)

#63 prokaryote23 opened 3 years ago
2
adding whell-install and PyMOL-Colab demos

#62 lyskov closed 3 years ago
1
Fix RAbD

#61 jadolfbr closed 3 years ago
1
15.1 failing in master

#60 jadolfbr opened 3 years ago
0
Fix extra if in debug statement causing tests to fail

#59 jadolfbr closed 3 years ago
0
Clean up imports

#58 OLaprevote closed 1 year ago
0
Light chain gene identity required in Notebook 12.02

#57 OLaprevote closed 3 years ago
2
chapter 9

#56 kathyle9 opened 3 years ago
1
Update RS in PyRosetta to reflect recent changes to the core code

#55 jadolfbr closed 3 years ago
5
XML in RS broken

#54 jadolfbr closed 3 years ago
4
cdr_selector = CDRResidueSelector() SmallKeyVector.hh line: 548

#53 jiyanbio closed 3 years ago
2