-
@mmagnus, can you add the following to your repository in rp-ready form?
- https://github.com/RNA-Puzzles/raw_dataset_and_for_assessment/tree/master/normalized/PZ26/pdb
- https://github.com/RNA-Puzz…
-
**Reported by Jerome Courcambeck on 18 Jun 38777278 20:26 UTC**
When Ball read DNA or RNA structure like pdb ID: 1RTD, 1LAE, 1ECU, 1JZC, 1F6X Ball can not built and
recognized the sugar, phosphate str…
-
速度很快的工作,很强。核酸的预测是很重要的问题,我也是关注者之一。HelixFold3提供了开源可用的工具,同时大幅度超越了RF2NA和RFAA,确实很棒。我有如下问题:
1. 想问一下CASP15的RNA测试的过程中,HelixFold3推理了几次?
2. HelixFold3如何做的ranking?对RF2NA和RFAA,有多次采样重新排序么?
3. AF3的指标是来源于AF3 serv…
-
Hi,
I saw that NAB is no longer part of AMBER so I wanted to use this GitHub repository. I installed it according to the instructions you provided on the README.
To contextualize my likely simpl…
-
Hi RiboDraw,
Really neat tool!
I was wondering if anyone has been able to use `rna_motif` with an expanded set of RNA modifications? It seems that the default library of Rosetta doesn't contain …
-
I'm not sure what the program means by that, any idea?
```
./GLM-Score test/1a9n_ProtOnly_fixed.pdb test/1a9n_RNAonly.pdb test/1a9n_RNAonly.mol2 RNA
ERROR! Can't find ligand/protein atoms root! | |…
-
Here I have described the current strategy regarding the retained diamine cores from the de-novo generated compounds since deprioritising the N-oxide series from which these cores originated.
- P…
-
Don't display Jmol for empty alignments.
Verify that PDB files are correctly generated.
Example: http://rna.bgsu.edu/r3dalign/results/51f1576c5209c#.UfFXlayAG9K
-
Hi,
I am converting the RNA PDB file built by Maestro to pdbqt.
`ls 1KOC_clean.pdb | xargs /usr/local/bin/obabel -xcr -ipdb -opdbqt | tee receptor.pdbqt`
However, this conversion prints the "R…
-
Hi, thank you for providing such great tool for RNA-SM predicting. I have submitted the PDB and SMs on RNAmigos web server, but it is still running after 48h. Is it normal?