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@maxieds Although gtfold will build on my office machine it does not run:
```
math11024:bin heitsch$ ./gtmfe test.txt
GTfold: A Scalable Multicore Code for RNA Secondary Structure Prediction
(c) …
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Hello Developers,
I’m trying to use `mxfold2` to predict for some RNA sequences. However, I encountered a inconsistent result between my local prediction and the web service at `http://www.dna.bi…
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1. As a next step for this project, Marc should try to retrain the MXfold2 PyTorch models to see if the retrained model can reproduce the performance using the same neural network architecture and par…
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Hi,
I'm reaching out with a question related to the applicability of your models for tasks with a smaller dataset. Specifically, I'm interested in whether there are available scripts for fine-tuning…
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Hi,
Would you kindly add the tutorial and examples to this repository? I've tried going to:
- http://www.bioinf.uni-leipzig.de/Software/gADP/tutorial.html
but this appears empty.
I would lik…
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https://dx.doi.org/10.1093/nar/gkv1025
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Introduction
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DeepChem's support for protein-based deep learning is still pretty early-stage. In this issue I propose a framework for adding support to DeepChem for doing more systemat…
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Hi dear team,
I performed RNAz prediction on an alignment of viral genomes of a specific viral species. To this aim, I first divided the alignment to windows using rnazWindow.pl, then perform RNAz …
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Project Lead: @homo-sapiens34
Mentor: @luispedro
Welcome to OLS-1! This issue will be used to track your project and progress during the program. Please use this checklist over the next few weeks …
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Sorry for the delays!
[scores.zip](https://github.com/kad-ecoli/rna3db/files/5469708/scores.zip)