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### Description of feature
Hi, I was wondering if you guys have thought to give the pipeline an option to use variants called from a DNA-seq(typically wgs) pipeline to use as input into "ASE read cou…
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Hi,
I'm using drop 1.3.3 in order to do aberrant expression analysis. However during outrider execution with 2 bam data and 9 external counts, I'm getting the following error:
```
[Tue May 30 16:…
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Determine the requirements and potential options for the basis of the Pangenome Annotation RNA-seq pipeline.
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Hi PacBio,
I just checked a filtered isoform list in "XXX.filtered_lite_classification.txt" file from my isoseq3/pigeon pipeline. There are many, so I want to prioritize the predicted isoform tran…
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This was reported by one of the users during Seattle Workshop.
Data analyzed with Cufflinks in particular were reported to be susceptible to batch effects. The tuxedo pipeline was replaced in 2016…
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Hi SPLASH,
**updated from my initial post**
I've started to run your pipeline and am now stuck on the `SPLASH_extendor_classification.R` and am troubleshooting line-by-line.
Using the paramet…
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Titles:
- Managing bioinformatic software and pipelines
- How to do bioinformatics like a professional bioinformatician
- Reproducible and scalable bioinformatics for researchers
Prerequisite…
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# manual annotation remapping
- [ ] request whole-genome alignment
- [ …
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### Name of the tool
cellranger multi
### Tool homepage
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
### Tool description
is a…
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- [x] Remove all donwstream analyses e.g., DeSeq & PCA
- [x] change script [[count-matrix.py](http://count-matrix.py/)](http://count-matrix.py/) line 40 sep="\t" to sep = ","
- [x] switch to one s…