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Hi @hyphaltip,
Can you point me to your favorite RNA-Seq data to run against your test species (_Coccidioides immitis_) in the pipeline?:
https://github.com/biodataprog/RNASeq_template/blob/ecabfc…
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Hi everyone. Great work for the new paper. I'm trying to replicate the results in your joint ATAC-seq and RNA-seq paper. I saw that for the analysis of A549 ATAC-seq, you mention that the procedure wa…
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Titles:
- Managing bioinformatic software and pipelines
- How to do bioinformatics like a professional bioinformatician
- Reproducible and scalable bioinformatics for researchers
Prerequisite…
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1. Blue color update in theme as used in GenPipes branding / other collaterals. (Update via @pphector the logo for genpipes uses the following blue RBG code: 11-45.9-73.7 or in HTML notation: 1c75bc).…
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# Update May 28th
Today, I was able to complete the pipeline up till deseq2 or possibly featurecounts. The Star script is finished, and now, within the Star rule, I am using samtools to separate th…
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Hey, I am trying to do allele-specific expression analysis (ASE) for a few RNA seq samples ( 32 disease and 5 normal samples, unpaired unrelated). Could you suggest a pipeline/method to convert the ma…
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hi guys i try to use hisat2 aligning the fastq file to the index which i have built before, here is the command line:
/home/wyf/miniconda3/bin/hisat2 -x /home/wyf/Pipeline/RNA-seq/02.hisat/Eriochei…
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back u…
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# manual annotation remapping
- [ ] request whole-genome alignment
- [ …