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GenPipes
GenPipes Read the Docs repository
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Update RTD build instructions in README for 8.x Sphinx upgrade
#280
shaloo
opened
1 week ago
0
Fix GitHub actions update for Sphinx 8 / Python 13
#279
shaloo
opened
1 week ago
2
Cleanup GenPipes doc sources, remove older mermaid diagrams for redesigned pipelines, unused files and the like
#278
shaloo
opened
2 weeks ago
0
Add Google Analytics to track GenPipes doc page usage metrics
#277
shaloo
closed
2 weeks ago
1
Upgrade Sphinx to latest 8.x we are using 5.0
#276
shaloo
closed
1 week ago
1
Small fix for ampliconseq docs
#275
MareikeJaniak
closed
2 weeks ago
1
Readset format for ampliconseq
#274
MareikeJaniak
closed
4 weeks ago
0
Review and merge GENPIPES_INI var updates via MJ
#273
shaloo
closed
1 month ago
0
updating reference to GENPIPES_INIS variable for regular use instruct…
#272
MareikeJaniak
closed
1 month ago
0
Merge final draft of GP 5.0 docs to master and publish at RTD
#271
shaloo
closed
2 weeks ago
3
Add release note and reorganize release note section per release category
#270
shaloo
closed
1 month ago
0
Line edits and additional corrections for the GenPipes v5 docs
#269
pphector
closed
1 month ago
1
Review latest 5.0 draft with all merged changes
#268
shaloo
closed
1 month ago
0
Proofing docs for GenPipes V
#267
shaloo
closed
2 months ago
0
Update new methylseq gembs protocol via MJ
#266
shaloo
closed
2 months ago
1
Update 5.0 docs with working GenPipes usage instructions
#265
shaloo
closed
2 months ago
2
Update node about CHR37
#264
shaloo
closed
1 month ago
2
Update Cram output dependencies for ChipSeq
#263
shaloo
closed
2 months ago
0
Review chunking of pipeline commands in 5.0x
#262
shaloo
closed
2 months ago
2
Reorg pipeline usage docs as discussed for ease of usage
#261
shaloo
closed
2 months ago
1
GenPipes 5.0 Troubleshooting Guide
#260
shaloo
closed
2 months ago
2
What's new in 5.0
#259
shaloo
closed
2 months ago
2
Update command for all pipelines. Use new format shared by MJ
#258
shaloo
closed
2 months ago
1
Python v3.11.1 onwards is supported from GenPipes v5.0 onwards
#257
shaloo
closed
2 months ago
0
Remove survey notice from the landing page of GenPipes RTD docs.
#256
shaloo
closed
5 months ago
0
DNA Seq 7 protocols schema to be regenerated, debug log required
#255
shaloo
closed
2 months ago
3
DNASeq and Tumorpair have merged - update dnaseq pipeline
#254
shaloo
closed
2 months ago
0
RNASeq Denovo Trinity updates schema needs to be updated for 5.0 need debug logs
#253
shaloo
closed
2 months ago
3
Methylseq pipeline schema updates
#252
shaloo
closed
4 months ago
4
Set up latest GenPipes modules for 5.0.0 and try a few pipelines
#251
shaloo
closed
2 months ago
4
GenPipes 5.0 scoping
#250
shaloo
closed
2 months ago
2
Update docs for GenPipes Release 4.6.1
#249
shaloo
closed
5 months ago
1
Update release notes for GenPipes v 4.6.0
#248
shaloo
closed
6 months ago
0
spike-in protocol (Chip Seq Diff Bind step with no input)
#247
kkleinoros
closed
6 months ago
5
Update docs for GenPipes v4.5.0
#246
shaloo
closed
9 months ago
0
Improve documentation of the clean command
#245
MareikeJaniak
closed
10 months ago
0
Nanopore pipeline documentation
#244
MareikeJaniak
closed
10 months ago
2
Update layout of all the GenPipes pipeline docs similar to the tabbed structure of Tumor Pair
#243
shaloo
closed
6 months ago
0
Update Genpipes copyright to 2024
#242
shaloo
closed
10 months ago
0
GenPipes 4.4.5 release update
#241
shaloo
closed
10 months ago
0
GenPipes 4.4.4 updates
#240
shaloo
closed
10 months ago
0
GenPipes v4.4.3 updates
#239
shaloo
closed
10 months ago
0
Using GEMINI with hg38
#238
AidanGCr
closed
1 year ago
4
Update DiffBind on compute canada
#237
ericloud
closed
10 months ago
2
typo in error msg
#236
ericloud
closed
10 months ago
3
GenPipes 4.4.3 Release updates
#235
shaloo
closed
10 months ago
1
Detect dead links
#234
shaloo
closed
1 month ago
3
Recommendation: Update design file example in the GenPipes tutorial to RNASeq which is more representative
#233
shaloo
closed
2 months ago
2
Mac OS build is failing on GitHub actions for PR - need to upgrade to node16 / python etc.
#232
shaloo
closed
1 year ago
2
Update Tumor Pair Pipeline for v4.4.2
#231
shaloo
closed
1 year ago
0
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