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GenPipes
GenPipes Read the Docs repository
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Chipseq update for release 4.4.2
#230
shaloo
closed
1 year ago
1
Update Methylseq for release 4.4.2
#229
shaloo
closed
5 months ago
1
RNASeq steps are out of sync in release 4.4.2 needs updates and addition of 3 -t options plus diagram update
#228
shaloo
closed
5 months ago
2
Design file example confusing
#227
MareikeJaniak
closed
2 months ago
7
Update documentation for latest release 4.4.2
#226
shaloo
closed
1 year ago
0
ReadTheDocs yaml config file requirement, setup update
#225
shaloo
closed
1 year ago
1
RNAseq documentation needs updating
#224
MareikeJaniak
closed
6 months ago
1
Broken links on workshop page
#223
MareikeJaniak
closed
1 year ago
1
Add explanation of -g option
#222
MareikeJaniak
closed
1 year ago
0
Typo on pre-req checklist page
#221
MareikeJaniak
closed
1 year ago
1
Broken links on accessing genpipes on CC servers page
#220
MareikeJaniak
closed
1 year ago
2
Error in example Chipseq readset file
#219
MareikeJaniak
closed
1 year ago
2
Run deadlinkchecks, spelling checks in latest GenPipes doc set
#218
shaloo
closed
10 months ago
1
Very minor spelling/phrasing suggestions for docs
#217
MareikeJaniak
closed
1 year ago
0
More detailed description of -t flag in tumor pair pipeline docs
#216
MareikeJaniak
closed
1 year ago
1
Example command for nanopore pipeline is incomplete in docs
#215
MareikeJaniak
closed
6 months ago
2
Details for methylseq pipeline protocols (-t flag)
#214
MareikeJaniak
closed
1 year ago
3
Incomplete step details in docs for dnaseq pipeline
#213
MareikeJaniak
closed
1 year ago
4
Minor link issues on testdata page in docs
#212
MareikeJaniak
closed
1 year ago
3
covseq test dataset not available
#211
MareikeJaniak
closed
6 months ago
8
Reference to old server in docs
#210
MareikeJaniak
closed
1 year ago
1
Links to test data in tutorial do not work
#209
MareikeJaniak
closed
1 year ago
2
log_report script usage only described for pbs, not slurm
#208
MareikeJaniak
closed
1 year ago
2
Outdated compute canada access command?
#207
MareikeJaniak
closed
1 year ago
2
Tip about cluster specific .inis shows up twice in all pipeline docs
#206
MareikeJaniak
closed
1 year ago
2
Update Release docs for v4.4.1 GenPipes
#205
shaloo
closed
1 year ago
0
Removed CCRI example from FAQ to avoid confusion.
#204
pphector
closed
1 year ago
2
Fix CoVSeq Pipeline example run missing -r readset file
#203
shaloo
closed
1 year ago
0
Review 4.4.1 docs and identify which ones need updating as per bitbucket sources
#202
shaloo
closed
1 year ago
2
Release Note update and tagging for v4.4.0 GenPipes Docs.
#201
shaloo
closed
1 year ago
1
Content update suggestions - MBourgey, License
#200
garantjm
opened
1 year ago
5
Bump pillow from 9.1.1 to 9.3.0 in /docs
#199
dependabot[bot]
closed
1 year ago
1
Bump gitpython from 3.1.27 to 3.1.30 in /docs
#198
dependabot[bot]
closed
1 year ago
1
Bump certifi from 2022.5.18.1 to 2022.12.7 in /docs
#197
dependabot[bot]
closed
1 year ago
1
Shaloo/192 rev updates
#196
shaloo
closed
1 year ago
0
GenPipes Release 4.3.2 documentation updates
#195
shaloo
closed
1 year ago
2
Tumor Pair pipeline is no longer unavailable - fix docs via Ed
#194
shaloo
closed
1 year ago
0
Via Ed - update all pipeline usage for ini file change since 4.2.0
#193
shaloo
closed
1 year ago
0
Review 4.3.2 GenPipes pipeline code and identify documentation gaps
#192
shaloo
closed
1 year ago
1
GenPipes Release Note and build update at RTD 4.3.1
#191
shaloo
closed
2 years ago
0
Update documentation for Release 4.3.0
#190
shaloo
closed
2 years ago
0
GenPipes release 4.2.0 updates
#189
shaloo
closed
2 years ago
0
Add GenPipes Survey link on the front page in a banner
#188
shaloo
closed
2 years ago
0
Need data to update the GenPipes history figure
#187
shaloo
opened
2 years ago
2
Chipseq readset file update via Pubudu
#186
shaloo
closed
2 years ago
0
Readset file issue highlighted by Pubudu in RTD docs - needs fixing
#185
shaloo
closed
2 years ago
0
GenPipes in a container doc review inputs for Pubudu
#184
shaloo
closed
2 years ago
1
Review and address Pubudu's RTD doc suggestions
#183
shaloo
closed
2 years ago
0
Address Pubudu's inputs for atac-seq design file updates
#182
shaloo
closed
2 years ago
0
Create RN for release 4.1.2
#181
shaloo
closed
2 years ago
0
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