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The SBOL format entry (http://edamontology.org/format_3725) currently applies only to the SBOL2 RDF/XML format, and not the SBOL3 format, which allows all forms of RDF.
Per the discussion on https:…
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@tnrich This is s stub for the SBOL support ticket
@jakebeal will join this repo and contribute
mfero updated
2 years ago
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```
sbol sbol-version https://raw.githubusercontent.com/sboltools/sboltools/master/test/data/sbol3/interaction.xml
sbol-version: unknown SBOL version: https://raw.githubusercontent.com/sboltools/s…
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In the move from SBOL 3.0.0 to SBOL 3.0.1, we deprecated the SBOL_FORWARD and SBOL_REVERSE_COMPLEMENT terms in favor of SO_FORWARD and SO_REVERSE.
SBOL Utilities should be upgraded to use the prefe…
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Is there a way to declare constants using sbol_factory?
For example, SBOL has the term `sbol#reverseComplement` for indicating directions, and this is declared in the SBOL3 OWL ontology: https://gi…
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Gonzalo Vidal presented a repressilator SBOL notebook during HARMONY2022.
Latest version is available at http://t.ly/loica. It contains some example code on how to create the repressilator in SBOL ba…
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This SBOL Model object would link to the SBML file via its source field.
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Any file with a CombinatorialDerivation currently produces an opaque failure because sbolgraph currently does not know about CombinatorialDerivation objects.
Example failure:
```
/Users/jakebeal/…
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### Background
Synthetic biologists use the Design, Build, Test, Learn (DBTL) cycle to engineer biological systems. The Synthetic Biology Open Language ([SBOL](https://sbolstandard.org/)) was develop…