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[Nextflow](https://www.nextflow.io) is a popular DSL for scientific workflows based on [Groovy](https://groovy-lang.org).
* Nextflow has an official syntax highlighter for Atom: https://github.com/ne…
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we should have a dag for https://github.com/microbiomeDB/biobakerymgx. it should probably work on the shotgun_metagenomics directory [here](https://github.com/microbiomeDB/shotgun_metagenomics), likel…
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## Overview
- Sharing research data in a repository such as Dataverse has become an important requirement by many journals and funding agencies and provides a key activity in producing reproducible r…
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I noticed the CI test doesn't use `nox`, which is the testing framework in this cookie.
https://github.com/scientific-python/cookie/blob/88dc8212f740783d4a74b239429c35950a73a8bd/%7B%7Bcookiecutter.…
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This might be true for a few different examples, but if I try:
```
asap-docking cross-docking --ligands input/lig_0.smi --pdb-file input/NP_722463.1_lig_0.pdb --target ZIKV-NS2B-NS3pro --cache-dir p…
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**Title of the talk/workshop**
Airflow: essentials of workflow orchestrator for ETL pipelines
**Abstract of the talk/workshop**
Apache Airflow has emerged as a powerful tool for orchestrating…
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URL: [https://www.sciencedirect.com/science/article/pii/S0167739X17314917](https://www.sciencedirect.com/science/article/pii/S0167739X17314917)
# This paper does
This paper discussing reproduci…
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Enhanced, improved and novel NMDC workflows to advance microbiome science
Similar to the entire field of genomics, all NMDC workflows (Appendix 15) are subject to an iterative
improvement process. To …
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During the [Scientific Python Developers Summit 2023](https://scientific-python.org/summits/developer/2023/), there was interest to use GitHub Actions workflows from here, particularly for wheel build…
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## Proposal Summary
The proposed feature is to provide integrated support for [Singularity](https://sylabs.io/docs/) in ClearML. Singularity is a powerful tool for packaging and running reproducible …