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Preferred Term: m6A-MTase sequencing assay
Synonyms: Fiber-seq
Definition: A DNA methylation profiling assay in which chromatin stencils are created by treating nuclei with m6A methyltransferase (MT…
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python ./EpiScan/commands/epimapping.py --test ./dataProcess/public/public_sep_testAg.tsv --embedding ./dataProcess/public/fasta/DB1.h5 --outfile ./dataProcess/public/public_sep_testAg.out --device 0
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Take time series data that is from A pulcra and align to "new" genome using Hisat.
Genome: https://gannet.fish.washington.edu/seashell/bu-github/deep-dive-expression/D-Apul/data/Apulcra-genome.fa…
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messag hash: 48a4a048cd05032b29d08387bd46988a23e07424c5872230ce5e27f3b8872da4 seq: 67 is pending
message hash: 01a261c1ecec4ca9632bd69b7d18c91eabfa08731cc47490615470b6d3626723 seq: 70 is complete
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This proposes to add `Seq.splitAround(separator): (Seq, Seq)` which splits a sequence in all items _before_ and _after_ the first item that is equal to the given separator.
`SplitAround` is useful …
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### Your current environment
vllm == 0.6.2
### Model Input Dumps
_No response_
### 🐛 Describe the bug
/home/linli/anaconda3/envs/LLM/lib/python3.11/site-packages/vllm/core/scheduler.py line 1247 …
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These two methods are new in Go 1.23 as part of the new iterators feature:
- https://pkg.go.dev/reflect#Value.Seq
- https://pkg.go.dev/reflect#Value.Seq2
```
% cat main.go
package main
impo…
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Hello thanks for the wonderful work. I am interested in downloading all transcripts for a given gene from the rna seq datasets available in sra.
Is there a way to specify the metadata such as spec…
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Hi, thank you so much for the great tool.
I'm trying to apply longshot on long-read RNA-seq data (Iso-seq data from PacBio HiFi reads).
I ran the pipeline with default options and got ~30% reads …
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### Description of feature
Hi, I was wondering if you guys have thought to give the pipeline an option to use variants called from a DNA-seq(typically wgs) pipeline to use as input into "ASE read cou…