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## Checklist
### preparation
* [x] freeze the master-branch (forbid everyone from making changes)
* [x] make sure that SEQAN_VERSION macros are correct (`include/seqan/version.h`)
* [x] ma…
rrahn updated
5 years ago
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Debian can use this to check the functionality without recompiling the packages. For example, this can catch regressions from any of the libraries that are dynamically linked in.
When we run these …
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I'm trying to build a docker container with GraphTyper, the pipeline repo and the necessary dependencies (see [current Dockerfile](https://github.com/jmonlong/docker-graphtyper2/blob/master/Dockerfile…
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Even when the missing `ctdVersion` is added, CTDOpts gets grumpy with empty `values` like this snippet from `flexbar --write-ctd` using Seqan 2.4.0
```
```
```
(ctd-converter) mcrusoe@mrcdev…
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We currently use SeqAn loading function, maybe this is better in SeqAn 2.0. When using the in-memory sequence store, the data should be read as a stream to support reading the output of decompression …
fungs updated
9 years ago
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http://bibiserv.techfak.uni-bielefeld.de/swift/
see also the implementation in RazerS http://bioinformatics.oxfordjournals.org/content/28/20/2592.full#T1
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This isn't a common case, but it's worth bringing up as a base-case issue. Passing a single nucleotide to banded global alignment can give spurious alignments.
```c++
#include "seqan/align.h"
#i…
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`stream/tokenization.h:311 Assertion failed : optr < ochunk.end should be true but was 0`
Here's a minimal test case:
```
(env)mcrusoe@athyra:~/khmer/gl-master$ g++ -I/home/mcrusoe/src/seqan/seqan-1…
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Dear LRcaller team,
I am calling SV genotypes on a dataset of 20 individuals sequenced with ONT (~40X).
I am runing LRcaller in parallel on each chromosome.
LRcaller help indicates that 3 diffe…
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Hi all.
`app_test_fiona` test is failing on `Fedora` with following error on `x86_64` architecture only:
```
Start 3: app_test_fiona
3: Test command: /usr/bin/python2 "/builddir/build/BU…