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WorkflowConversion
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CTDConverter
Series of python scripts to convert CTD files into other formats such as Galaxy, CWL
MIT License
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Switch to github actions and changes to make tests pass
#64
bernt-matthias
opened
11 months ago
0
galaxy: fix selects and more
#63
bernt-matthias
opened
3 years ago
6
Make a new release
#62
bernt-matthias
closed
3 months ago
2
convert to cwl: output-prefix support
#61
mr-c
opened
3 years ago
0
check changed/new docstrings
#60
mr-c
closed
3 years ago
3
WIP: fix layout of package
#59
mr-c
closed
3 years ago
4
restructure python package
#58
bernt-matthias
closed
3 years ago
6
some fixes for galaxy
#57
bernt-matthias
closed
3 years ago
3
Goodbye Python 2.7, hello Python 3.6!
#56
mr-c
closed
3 years ago
4
gather workflows for end-to-end testing
#55
mr-c
opened
3 years ago
6
Improved CTD to galaxy conversion
#54
bernt-matthias
closed
3 years ago
18
Lesson learned from unit tests
#53
bernt-matthias
closed
3 years ago
2
disable quoting in command block
#52
bernt-matthias
closed
3 years ago
1
few more changes I collected during GCC2019 hackaton
#51
bernt-matthias
closed
5 years ago
1
test data
#50
bernt-matthias
closed
4 years ago
7
Galaxy converter improvements
#49
bernt-matthias
closed
5 years ago
1
Add unit tests for CWL
#48
Tomnl
opened
5 years ago
4
Python package
#47
Tomnl
closed
5 years ago
1
Order Galaxy XML to IUC recommendations
#46
Tomnl
closed
3 years ago
1
Galaxy xml via configfile
#45
bernt-matthias
closed
3 years ago
1
galaxy ctd converter improvements
#44
bernt-matthias
closed
5 years ago
1
Flags get not properly translated into cwl
#43
mwalzer
opened
5 years ago
4
cwl conversion adds version parameter even if the tool does not have a version parameter
#42
mwalzer
opened
5 years ago
0
defaults render cwl invalid
#41
mwalzer
opened
5 years ago
1
Add setup.py
#40
mr-c
closed
5 years ago
3
LICENSE says GPL-3, convert.py says Apache-2.0; which is it? :-)
#39
mr-c
opened
6 years ago
1
'CTD2Converter' not used elsewhere, remove the '2'
#38
mr-c
closed
5 years ago
0
CWL: \n is not valid YAML, nor do URLs need wrapping in <>
#37
mr-c
opened
6 years ago
0
cwl always needs an `output` section, even if empty
#36
mr-c
opened
6 years ago
0
Unable to parse CTD from Seqan 2.4.0
#35
mr-c
opened
6 years ago
2
Fix max attribute for repeated select lists
#34
blankclemens
closed
6 years ago
1
Add support for the <citations> element in Galaxy.
#33
chahuistle
opened
6 years ago
5
add NoFlo support
#32
jibe-b
opened
6 years ago
0
Positional parameters in generated files
#31
chahuistle
opened
7 years ago
5
Added CWL Support
#30
chahuistle
closed
7 years ago
0
Use Python's provided logging module
#29
chahuistle
opened
7 years ago
0
Add CWL support
#28
chahuistle
opened
7 years ago
1
Fix format tag for text files
#27
blankclemens
closed
7 years ago
1
addendum to fix for #21
#26
mwalzer
closed
7 years ago
1
[fix] suggestion to fix #22
#25
mwalzer
closed
7 years ago
0
[fix] suggestion to fix #21
#24
mwalzer
closed
7 years ago
2
[fix] suggestion to fix #20
#23
mwalzer
closed
7 years ago
0
UnicodeEncodeError for u'\xb2'
#22
mwalzer
closed
7 years ago
6
Inputs tag for input files is missing format
#21
mwalzer
closed
7 years ago
0
produces incomplete output tag
#20
mwalzer
closed
7 years ago
8
Always add whitespace_validation to _Choices
#19
blankclemens
closed
7 years ago
6
Openms fixes
#18
blankclemens
closed
7 years ago
0
Conversion of commandline flags
#17
Stortebecker
closed
7 years ago
3
Fix for OpenMS
#16
blankclemens
closed
7 years ago
1
Documentation: Add some example CTDs
#15
sneumann
opened
8 years ago
1
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