-
```
cwltool --version
/Users/kghose/.venvs/toil/bin/cwltool 3.0.20200324120055
```
The following bash script is valid
```
set -xv
echo \
"A new line" \
"Another line" \
"Boo"
``…
ghost updated
4 years ago
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When getting a `BadRequest` error from the SBG platform, it's not clear what the cause of the bad request is. I assume this could be input IDs, the workflow IDs, the project IDs etc. If the reason for…
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Hi folks,
I was having a problem where authentication would work fine, and listing all projects with
`p
mfoos updated
5 years ago
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I noticed that the filenames of sdist source tarballs for python packages changed around December 2023 for packages containing hyphens (if they are packaged with setuptools and use the latest version)…
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Hi
I'm trying to use scRNAseq data from the BD Rhapsody to call variants in mtDNA.
I've realigned a BAM file using STAR:
###
"/home/alan/AbSeq/STAR-2.7.10a/source/STAR" --runThreadN 25 --r…
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Attempting to roundtrip the following workflow:
[topmed-alignment.cwl.txt](https://github.com/common-workflow-language/schema_salad/files/2182314/topmed-alignment.cwl.txt)
Fails validation
Ro…
ghost updated
6 years ago
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Thank you for making this shiny-server install method. I let it run all night as suggested. The next day I log into my raspberry and the cmd line is not open. I assumed it must have rebooted after …
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Right now the code view shows only JSON representation.
It seems the community is preferring YAML, especially for CWL-1 representation.
Would be possibile to have the code view to show YAML dire…
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Example of a Seven Bridges CWL that uses secrets.
``` json
{
"class": "CommandLineTool",
"cwlVersion": "v1.2",
"$namespaces": {
"sbg": "https://sevenbridges.com"
},
…
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I've created `expressiontool` type steps manually but I'm not able to manually import them into my workflow. They do appear and work if I manually edit my workflow cwl document and add them. Are there…