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the default peptide length in DIANN is 7-30.
Clearly, this is an overall suitable r…
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Hi there,
I stumbled upon a problem when wanting to convert our overlap…
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Hello Vadim,
I tried to load a spectral library from this repository: https://github.com/ZiluYe/Glyco-DIA
These are generated spectral libraries with glyco modifications from Spectronaut.
When…
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Hi,
Thanks for developing this amazing software.
I'm using DIANN(1.8.1) to search the tims data with spectral library which is generated by DDA data using MSFragger, and can identify 15 target prot…
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any thought how we can adopt outputs from PD to be used in this pipeline?
the problem with PD output is that the each phospho site location is given within the phosphopeptide and not the protein!
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Hi Vadim,
Thank you for your continued effort on DIA-NN, which I am using more and more frequently for our DIA analyses!
We have recently switched from DDA to DIA when analysing phospho enriched…
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Hi MSstatsLiP-Team,
I have encountered an error when I use your package to build the adjusted model using the LiP and Trp datasets from the Spectronaut analysis with the groupComparisonLiP function…
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Dear Vadim,
maybe this is one of the yet hidden features of DiaNN: As I have a more complex experimental setup sometimes that involves biological and technical replicates and perhaps also increasin…
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I've been seeing new format for modifications from recent versions of MaxQuant that cause a failure of `artmsProtein2SiteConversion`. Instead of the short `K(ph)`, MaxQuant is now using `S(Phospho (S…
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=> Input files: https://cloud.cmb.ugent.be/index.php/s/zdGB3zZ7Fwed9gq?path=%2FModule_4_DIA_Quantification%2FSpectronaut
In the parameter file no clear definition of MS1 and MS2 tolerance:
│ ├…