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Proteobench
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ProteoBench
ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to allow a continuous, easy, and controlled comparison of proteomics data analysis workflows.
https://proteobench.readthedocs.io
Apache License 2.0
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:bug: update publishing workflow
#318
enryH
opened
2 weeks ago
1
refactoring the sidebar and general configs
#317
julianu
closed
2 weeks ago
0
search results accesible for download?
#316
adder
opened
3 weeks ago
1
:memo: harmonize version in CHANGELOG.md
#315
enryH
closed
2 weeks ago
1
adding gdpr notices if provided
#314
julianu
closed
2 weeks ago
1
:memo: Add current proteobench version to landing page of UI
#313
enryH
closed
3 weeks ago
9
:sparkles: support dynamic version (identify version by latest tag+co…
#312
enryH
closed
4 weeks ago
2
:bug: Allow local use and UploadFile use in streamlit. Fix #310
#311
enryH
closed
1 month ago
7
issue with alphapept parameter parsing
#310
mlocardpaulet
closed
1 month ago
1
keep track of ProteoBench version in the parsed parameters of the runs?
#309
mlocardpaulet
opened
1 month ago
1
Size limit for the software output files (ions)
#308
mlocardpaulet
closed
1 month ago
3
Fix double brackets and C-terminal mods
#307
RobbinBouwmeester
closed
1 month ago
0
add comments and doc regarding FragPipe protein groups parsing
#306
mlocardpaulet
closed
1 month ago
0
Combine protein columns fragpipe
#305
RobbinBouwmeester
closed
1 month ago
2
modify documentation and website
#304
mlocardpaulet
closed
1 month ago
0
error message when sending Proline run for public upload
#303
mlocardpaulet
opened
1 month ago
3
:bug: Fix FragPipe parameter parsing
#302
enryH
closed
1 month ago
0
protein groups parsing for FragPipe
#301
mlocardpaulet
opened
1 month ago
2
🔖 Add current version tag of proteobench on main page of streamlit application
#300
enryH
closed
1 month ago
1
Update parse_settings_maxquant.toml
#299
RobbinBouwmeester
closed
1 month ago
13
Error submitting proteobench zip file produced by i2MassChroQ
#298
OlivierLangella
opened
1 month ago
3
added port to server update call
#297
julianu
closed
1 month ago
0
Update DDA_Quant_ion.py
#296
RobbinBouwmeester
closed
1 month ago
0
Add version to docs
#295
enryH
closed
1 month ago
3
Fix that resets all datapoints
#294
RobbinBouwmeester
closed
1 month ago
0
fixing problem reported in issue #291
#293
wolski
closed
2 months ago
0
Fix local storage
#292
RobbinBouwmeester
closed
2 months ago
0
:bug: QuantScores
#291
enryH
opened
2 months ago
4
:bug: saving input data for upload
#290
enryH
closed
2 months ago
3
Fix call emptied df
#289
RobbinBouwmeester
closed
2 months ago
0
:bug: "old_new" data point not set?
#288
enryH
closed
2 months ago
4
:art::fire: Remove msfragger .params as dependency for FragPipe
#287
enryH
closed
1 month ago
2
Error when changing `Minimal ion quantifications`
#286
vedran-kasalica
closed
1 month ago
10
Error during submission of FragPipe output/FragPipe - MSFragger version number
#285
brvpuyve
closed
1 month ago
11
:bug: Refactor saving of parameters file in DDA quant base module (#283)
#284
enryH
closed
2 months ago
7
error during public submission of MQ data v2.5.1.0
#283
mlocardpaulet
closed
2 months ago
2
modification parsing: missing ")" and "]"
#282
mlocardpaulet
opened
2 months ago
6
Error when several times switching between Home and "DDA Quant"
#281
wolski
closed
2 months ago
2
Make user friendlier error report when discrepancy betwenn "Software tool" and uploaded file.
#280
wolski
opened
2 months ago
0
:sparkles: parse parameters from i2masschroq
#279
enryH
closed
1 month ago
3
Documentation
#278
mlocardpaulet
closed
2 weeks ago
3
add troubleshooting section in documentation
#277
mlocardpaulet
opened
3 months ago
2
Convert methods in gh.py into a class
#276
wolski
opened
3 months ago
0
Refactor webinterface
#275
RobbinBouwmeester
closed
2 months ago
5
:memo: delete old sentence (update webserver first!)
#274
enryH
closed
1 month ago
0
Request for FragPipe Parameter File Upload Feature
#273
jacobfh1
closed
1 month ago
6
Refactor module
#272
wolski
closed
3 months ago
6
Refactor Remove Duplicated code and toml files
#271
wolski
closed
2 months ago
1
Refactor parse.py and ParseSettings.py
#270
wolski
closed
2 months ago
1
Refactoring of Modules - Modularise and move into packages
#269
wolski
closed
2 months ago
1
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