-
Hi, I got the following errors when running squire Map and Call.
It looks like similar problems to #19 , but I am not sure how to fix it. Please would you let me know how to solve these problems?
…
-
Hello,
I have been having encountering an error running the SQuIRE Map command on my Fastqs.
Traceback (most recent call last):
File "/gs/gsfs0/users/skattapong/.conda/envs/squire/bin/squire"…
-
Hello,
I'm doing an RNA-seq analysis on 80 files taken from CARNES 2015 paper. At the mapping phase, 4 files fail, with the following error message:
Script Arguments
=================
fetch_fo…
-
I have been working with SQuIRE a few months performing different analysis with the samples of my laboratory.
Now, I am going to start analyzing samples of different laboratories for increasing the …
-
Dear all,
please would you let me know : would it be possible to have a docker container for SQuIRE ?
thanks !
bogdan
-
I am getting this error in only 8 of 86 samples:
Traceback (most recent call last):
File "/home/alejandro.rubio/tools/miniconda3/envs/squire/bin/squire", line 11, in
srun: error: mulhacen9: ta…
-
Hello,
I managed to arrive to mapping step, however it stops because of an error (please see below). Any help would be appreciated.
Thanks,
Martina
squire Map --read1 /data/MB998/HepC_Uwe/…
-
Hi, I'm running SQuIRE to quantify TEs on a non-UCSC genome and I managed to finish the mapping step, which seems fine. Next, I tried the Count command for one of my samples and I get the following er…
-
Hi wyang17,
I am having an issue with running the fetch command as shown below.
`Traceback (most recent call last):
File "/home/svu/phaei/.conda/miniconda/4.9/envs/squire/bin/squire", line 11, …
-
Hello,
I am really sorry for bothering you again, but I have a new problem when I am trying to run the fetch phase.
It looks like the arguments are fine, however, I am getting an error that has to…